DRSC/TRiP Functional Genomics Resources

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Protein Alignment hrg and Papolb

DIOPT Version :9

Sequence 1:NP_001261097.1 Gene:hrg / 49636 FlyBaseID:FBgn0015949 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_001012020.1 Gene:Papolb / 304300 RGDID:1310946 Length:642 Species:Rattus norvegicus


Alignment Length:700 Identity:338/700 - (48%)
Similarity:435/700 - (62%) Gaps:94/700 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 STSG----GPPAKQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNT 78
            :|.|    .|..||.|::|.||||.|:..|.:.|.:|..:|:|:.|||.::||..|:.||.|||.
  Rat     7 TTQGAQQPAPAPKQYGISSPISLAAPKDTDRELTQKLIETLQPFGVFEEEEELQRRILILQKLNN 71

  Fly    79 LVKQWVKEISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFE 143
            |||:|::|||.|:|:|::..|.:||||:||||||||||.|||||||||||||:::|.|:|.||::
  Rat    72 LVKEWIREISESRNLPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRNDFFTSFYD 136

  Fly   144 VLKKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRSVRS 208
            .||.|.||.:.|:||||||||||:.|||||||:|||||:|:.||:|.|||||:||:|||.|.:||
  Rat   137 KLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRS 201

  Fly   209 LNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTCQLYPNAAA 273
            |||||||||||.|||||::|||.||.||||||.|.||||.||:.|||:|||||||||||||||.|
  Rat   202 LNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNAIA 266

  Fly   274 ATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIITPAYPQQNSTFNVS 338
            :|||.|||||||.|:||||||||.|:..||...|||||||.||||||||||||||||||||:|||
  Rat   267 STLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVS 331

  Fly   339 ESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVLLVNSQTADDHLEWCGLVE 403
            .||:.|::.||.:|:.||.||:|.:..|.:||||||||.:|:|:||||.::.|...||||.||||
  Rat   332 VSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKYKHYIVLLASAPTEKQHLEWVGLVE 396

  Fly   404 SKVRLLIGNLERNPHIALAHVNPKCFEFKKGQSANNSQNNSGNEDDLKQSQGNQSAVTSAPFCSM 468
            ||:|:|:|:||:|..|.||||||:.|...|        .|...|:                |.:|
  Rat   397 SKIRILVGSLEKNEFITLAHVNPQSFPAPK--------ENVDKEE----------------FRTM 437

  Fly   469 WFIGLEFERSEN---LNVDLTESIQNFTEHVMMHGVNIKMLKEGMTIDARHVKRKQLSLYLDSDF 530
            |.|||..::.||   |::|||..||:||:.|....:|.||.:..|.|.|.|::||:|...|.:..
  Rat   438 WVIGLVLKKPENSEILSIDLTYDIQSFTDTVYRQAINSKMFEMDMKIAAMHLRRKELHQLLPNHV 502

  Fly   531 LKRERKSMESHNNFNNTLLANRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKIQRLSDSLTEE 595
            |:::    |:|              .||                       |.::..::||....
  Rat   503 LQKK----ETH--------------LTE-----------------------GVRLTAVNDSSLLL 526

  Fly   596 NSNASSDMGAGTPT-TPTTAQLSAPSFKSSGKNGSEIDVVEQEPTQ--------PHNNGNASSNT 651
            :.::.:.|.|.:|| |..|..|:|   ...|:|...:.|:....|.        .|.|...||..
  Rat   527 SIDSENSMTAPSPTGTIKTGPLTA---NPQGRNSPALAVMAASVTNIQFPDVSLQHVNPIESSGI 588

  Fly   652 TTTEVACSXQPPTLHPHPPHQQPPPAPPQ----PPAHHHHHQKFRKNNNA 697
            ..:|.....      |..|...|||.|..    ...|..:|......|.|
  Rat   589 ALSESIAQI------PSQPTISPPPKPTMTRVVSSTHLVNHPSRPSGNTA 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrgNP_001261097.1 PTZ00418 28..600 CDD:240410 306/574 (53%)
PAP_central 29..371 CDD:282745 229/341 (67%)
PAP_RNA-bind 374..534 CDD:282743 66/162 (41%)
PapolbNP_001012020.1 PTZ00418 10..569 CDD:240410 321/626 (51%)
PAP_central 22..364 CDD:282745 229/341 (67%)
PAP_RNA-bind 367..508 CDD:282743 66/168 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D252593at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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