DRSC/TRiP Functional Genomics Resources

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Protein Alignment hrg and pla1

DIOPT Version :9

Sequence 1:NP_001261097.1 Gene:hrg / 49636 FlyBaseID:FBgn0015949 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_595362.1 Gene:pla1 / 2541099 PomBaseID:SPBC646.04 Length:566 Species:Schizosaccharomyces pombe


Alignment Length:578 Identity:213/578 - (36%)
Similarity:328/578 - (56%) Gaps:60/578 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVKEISVS 90
            ||.|:|..||.|....::......|...|:..|:|||..|...|:::|.:|..:..::||::|::
pombe     4 KQWGITPPISTAPATEQENALNTALINELKNQNLFESPAESEKRVKVLDELQQITTEFVKKVSLA 68

  Fly    91 KNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVLKKQPEVTECR 155
            |:|.|..|.:.||||:|:|||||||:..|:|||.|.|.|:::.|.::||....:|:::.|||:..
pombe    69 KHMNEKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSRDNFFQDLEPMLREREEVTDLA 133

  Fly   156 SVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRSVRSLNGCRVTDEILA 220
            :|.:|:||:||..|.||.|||:|||||:..:|.|.:|.|:|||:.::.|.|.||||.||||:||.
pombe   134 AVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEERCVLSLNGTRVTDQILQ 198

  Fly   221 LVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTCQLYPNAAAATLVHKFFLVFS 285
            ||||...|:.|||.||.||::..||:|.:|:.|||.|||:|||.|||||||.::.:|.|||.:..
pombe   199 LVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAWAMMVARICQLYPNAVSSVIVAKFFRILH 263

  Fly   286 RWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIITPAYPQQNSTFNVSESTKKVILTEFN 350
            :|.||.|:|||..::..|:.::|:|::..||:.|.|||||||||...:|.|::.||:.:||.|..
pombe   264 QWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPIITPAYPSMCATHNITLSTQTIILREMV 328

  Fly   351 RGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVLLVNSQTADDHLEWCGLVESKVRLLIGNLER 415
            |...|.|:||:..:||..||:...||:||:|::.:...::||:..|:|.||||||:|.|:..||.
pombe   329 RAGEIADQIMVKALPWSALFQKHDFFHRYKHYLTITAAAKTAEAQLKWAGLVESKLRHLVTRLEL 393

  Fly   416 NPHIALAHVNPKCFEFKKG--------------------------------QSANNSQNNSGNED 448
            ...|||||      .|.||                                :.||::.|....::
pombe   394 VDAIALAH------PFNKGFDKVYNCSSEEEAQQVASGVTLEVAYESTDHEKLANDTVNEEKADN 452

  Fly   449 DLKQSQGNQSAVTS--APFCSMWFIGLEFERSEN---LNVDLTESIQNFTEHVMMHGVNIKMLKE 508
            ...::.|:::....  ..:.:..:||||.|:.:.   ..:|::...|.|.|      :..|..|.
pombe   453 TESKADGSENGEKQIFPVYTTTCYIGLELEKKKGHPIKRLDISWPTQEFYE------LCKKWDKY 511

  Fly   509 GMTIDARHVKRKQLSLYLDSDFLKRERKSMESHNNFNNTLLANRKRLSTELAQSQDPL 566
            ..|:....:|..:.:...|..|...|.:..           |.:||.:.:.|.|.:.|
pombe   512 DDTLMNVFIKNTKNTALPDEVFEPGEERPK-----------ATKKRSTADTAHSTEQL 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrgNP_001261097.1 PTZ00418 28..600 CDD:240410 211/576 (37%)
PAP_central 29..371 CDD:282745 157/341 (46%)
PAP_RNA-bind 374..534 CDD:282743 46/196 (23%)
pla1NP_595362.1 PAP1 2..566 CDD:227513 213/578 (37%)
PAP_central 7..350 CDD:282745 158/342 (46%)
PAP_RNA-bind 352..540 CDD:282743 47/199 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 328 1.000 Domainoid score I214
eggNOG 1 0.900 - - E1_COG5186
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56959
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001429
OrthoInspector 1 1.000 - - oto100858
orthoMCL 1 0.900 - - OOG6_100691
Panther 1 1.100 - - LDO PTHR10682
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3127
SonicParanoid 1 1.000 - - X722
TreeFam 1 0.960 - -
1211.800

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