DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)37Bb and dmgdh

DIOPT Version :9

Sequence 1:NP_536791.1 Gene:l(2)37Bb / 49427 FlyBaseID:FBgn0002021 Length:515 Species:Drosophila melanogaster
Sequence 2:XP_002940239.3 Gene:dmgdh / 100492188 XenbaseID:XB-GENE-994138 Length:870 Species:Xenopus tropicalis


Alignment Length:538 Identity:120/538 - (22%)
Similarity:206/538 - (38%) Gaps:140/538 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 IRRTLRLLGNDMRKVKEFFVPKEPET-EKVPI---------------PT----QSQFHFSGERDK 84
            |||:|||            :|::..| :.:|:               |:    :.|..|.|:|.|
 Frog     2 IRRSLRL------------IPQQLSTCDSLPVWNTAAAATRRSLSAGPSTQGEEKQSAFLGKRWK 54

  Fly    85 SKEATVPDDFQTHCDVLIIGGGGVGSSIAYWLKEKARDGL-NVVVVEKDDTYAQSATRVSVGGLC 148
            ....||           |||||.:|.|:||.|   |:.|: :||::||.:..|.|....:  ||.
 Frog    55 DTAETV-----------IIGGGCIGVSLAYHL---AKAGMKDVVLLEKSELTAGSTWHAA--GLT 103

  Fly   149 QQFSLPENI-QMSLFAADFLRSARKHFGEEVPLQFTPHGHLMLAG-EEHAESLKRSSQLQNELGA 211
            ..|....|: ::..::........:..|:.|  .|...|.:.:|. ....:.||......:....
 Frog   104 TYFHPGINLKKIHYYSIKLYERLEEETGQAV--GFHQPGSIRIASTPTRVDELKHQMTRAHWHPT 166

  Fly   212 RNELLTADRLTARFPWLNTKGIALGCLGLEKEGWFNPLALLSNFRRSASGYGAH-FISGQVVDFE 275
            ...|:..:::...||.||...:..| |....:|..:|.:|.......|..|||. :...:|    
 Frog   167 PQYLVEPEKVQELFPLLNMNKVLAG-LYNPGDGHIDPYSLTMALAAGARKYGAQLYYPAEV---- 226

  Fly   276 FKSQTDISVVTDLGSNEGAYTGLEKAVIQLPDGT------RRTCKFALCVISAGASSEQIARLAR 334
                                |||    |..|:||      ..|......|.:||..:.::.:|. 
 Frog   227 --------------------TGL----IPQPNGTWDVVTAHGTIHANRIVNAAGFWAREVGKLI- 266

  Fly   335 IGVGPGILRVPLPINARKRYMYAINSQAQSAPGMN--MPMTIDPSGIFI---RRDG-LGGNY--- 390
                 |:....:|::    :.|.:.:.......:|  :|:..|..|.:.   .||| |.|.|   
 Frog   267 -----GLPHPLIPVH----HQYVVTATVPEVKALNRELPVLRDLEGSYYLRQERDGLLFGPYESQ 322

  Fly   391 --ICVQDS-----------TEEYNSAMIDPQYFAQHIRPHLYNRIPVLGEAQVVDSWAG--CYDH 440
              :.:|||           .|.:.|   |......|:...: :.:|||..|.:::..:|  .|..
 Frog   323 EKMKLQDSWVTDGVPPGFGKELFES---DLDRIMDHVEAAM-DMVPVLRNADIINIVSGPITYSP 383

  Fly   441 NVYDENGILGAHPYYNNLYLATGFSGHGVQQSLAVGRAISELIMDG--QFRTIDLSRLSFDRLIV 503
            ::..   ::|.|....|.::|.|| |:|:..:..:|:.:|:.||.|  ||..|:|....:.|...
 Frog   384 DILP---MVGPHQGVQNYWVAIGF-GYGIIHAGGIGKFLSDWIMSGEPQFDLIELDPNRYGRWTT 444

  Fly   504 DQ-------PMFELNNVL 514
            .|       ..:..||::
 Frog   445 TQYTALKARESYGFNNIV 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37BbNP_536791.1 DadA 113..501 CDD:223737 92/423 (22%)
dmgdhXP_002940239.3 DadA 54..442 CDD:223737 102/452 (23%)
FAO_M 425..479 CDD:406692 9/38 (24%)
GcvT 471..863 CDD:223481
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D752680at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.