DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRpL4 and AT2G20060

DIOPT Version :9

Sequence 1:NP_524939.1 Gene:mRpL4 / 49425 FlyBaseID:FBgn0001995 Length:296 Species:Drosophila melanogaster
Sequence 2:NP_565463.1 Gene:AT2G20060 / 816525 AraportID:AT2G20060 Length:300 Species:Arabidopsis thaliana


Alignment Length:244 Identity:89/244 - (36%)
Similarity:128/244 - (52%) Gaps:20/244 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 TRSPLILPQ----DYTD-CLPVSRNTARQAWIENTDAVAERKVGLIELHPDVFAAQPRVDIIQEN 102
            |:..::.|.    .|.| .:||            |:...|.| |.:.|..|||....|.|||...
plant    72 TKKTVLTPDRTIGQYQDLVIPV------------TNFQNEEK-GFMVLAGDVFDVPIRKDIIHNV 123

  Fly   103 VEWQSKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRARHGSLRSPMLKGGGVVHGPRSPTTHFYM 167
            |.||...|......|||.:||.|.|||||.|||.||||||:||.|..:||.|:|||: |.:|...
plant   124 VRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLRGPQFRGGCVMHGPK-PRSHAIK 187

  Fly   168 LPFYKRVLGLTSTLSVKLAQDDLHIIDNVDIPTGDAEFLKDLIAERNWGPSVLIVDEDHMFPANI 232
            :....|.|||...|:.:.|:..|.:.|::.:||...:.:.:...:......||:| |.......:
plant   188 MNKQVRRLGLKIALTARAAEGKLLVFDDLGLPTHKTKNIVNYYNQMENTKKVLVV-EGGPIDEKL 251

  Fly   233 CQASDDLGYVNLMPTFGLNVYSMLKHDTLVLTVAAVKHLEQRLLYQLNR 281
            ..|:.:|.|||::|:.||||||:|.||||:::..||..:.:|:...:||
plant   252 KLATQNLHYVNIIPSIGLNVYSILLHDTLLMSRDAVNKIVERMHTPINR 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL4NP_524939.1 Ribosomal_L4 83..274 CDD:278970 76/190 (40%)
AT2G20060NP_565463.1 rplD 91..293 CDD:235404 82/216 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 130 1.000 Domainoid score I1708
eggNOG 1 0.900 - - E1_COG0088
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H32286
Inparanoid 1 1.050 136 1.000 Inparanoid score I1820
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1592747at2759
OrthoFinder 1 1.000 - - FOG0003002
OrthoInspector 1 1.000 - - oto3470
orthoMCL 1 0.900 - - OOG6_101056
Panther 1 1.100 - - LDO PTHR10746
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3343
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.830

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