DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SERCA and PMA2

DIOPT Version :9

Sequence 1:NP_726381.1 Gene:SERCA / 49297 FlyBaseID:FBgn0263006 Length:1020 Species:Drosophila melanogaster
Sequence 2:NP_015289.1 Gene:PMA2 / 856071 SGDID:S000005957 Length:947 Species:Saccharomyces cerevisiae


Alignment Length:1001 Identity:254/1001 - (25%)
Similarity:407/1001 - (40%) Gaps:251/1001 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GHSKTVEQSLNFFGTDPERGLTLDQIKANQKKYGPNELPTEEGKSIWQLVLEQFDDLLVKILL-L 67
            |.....|:.|:   |||..|||.|::...:||||.|:: .||.:|           |:||.|: .
Yeast   100 GQRVVPEKDLS---TDPAYGLTSDEVARRRKKYGLNQM-AEENES-----------LIVKFLMFF 149

  Fly    68 AAIISFVLALFEEHEETFTAFVEPLVILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVVRQ 132
            ...|.||:..........:.:|:..||..:|:.||.||..||..|.|.::.||:.......|:|.
Yeast   150 VGPIQFVMEAAAILAAGLSDWVDVGVICALLLLNASVGFIQEFQAGSIVDELKKTLANTATVIRD 214

  Fly   133 DKSGIQKVRAKEIVPGDLVEVSVGDKIPADIRITHIYSTTLRIDQSILTGESVSVIKHTDAIPDP 197
            .:  :.::.|.|:|||:::::..|...|||.||. .....|:||||.:||||::..||..     
Yeast   215 GQ--LIEIPANEVVPGEILQLESGTIAPADGRIV-TEDCFLQIDQSAITGESLAAEKHYG----- 271

  Fly   198 RAVNQDKKNILFSGTNVAAGKARGVVIGTGLSTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSK 262
                    :.:||.:.|..|:|..||..||.:|.:|:....:.:...::....:.|:..|..|..
Yeast   272 --------DEVFSSSTVKTGEAFMVVTATGDNTFVGRAAALVGQASGVEGHFTEVLNGIGIILLV 328

  Fly   263 VISVICVAVWAINIGHFNDPAHGGSWIKGAIYY--------FKIAVALAVAAIPEGLPAVITTCL 319
            ::....:.||.                  |.:|        .:..:.:.:..:|.|||||:||.:
Yeast   329 LVIATLLLVWT------------------ACFYRTVGIVSILRYTLGITIIGVPVGLPAVVTTTM 375

  Fly   320 ALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFIFDKVEGND---SSFLE 381
            |:|...:|||.|||:.|.::|:|....::|||||||||.|::|:...:..:.|..:|   ::.|.
Yeast   376 AVGAAYLAKKQAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHEPYTVEGVSPDDLMLTACLA 440

  Fly   382 FEMTGSTYEPIGEVFLNGQRIKAADYDTLQELSTICIMCNDSAIDYNEFKQAFEKVGEATETALI 446
            ........:.|.:.||.                        |.|:|.:.|.|.            
Yeast   441 ASRKKKGLDAIDKAFLK------------------------SLIEYPKAKDAL------------ 469

  Fly   447 VLAEKLNSFSVNKSGLDRRSAAIACRGEIETKWKKEFTLE---FSRDRKSMSSYCTPLKASRLGT 508
                                          ||:|   .||   |....|.:::.....:..|:  
Yeast   470 ------------------------------TKYK---VLEFHPFDPVSKKVTAVVESPEGERI-- 499

  Fly   509 GPKLFVKGAPEGVLERCTHARVGTTKVPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKP 573
               :.|||||..||:...........|......|...||..|        .|.|.:|        
Yeast   500 ---VCVKGAPLFVLKTVEEDHPIPEDVHENYENKVAELASRG--------FRALGVA-------- 545

  Fly   574 DEMDLGDSTKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRR 638
              ...|:.    .:|:    :||:..:||||.:...:|...|..|:|:.::|||....|:..||:
Yeast   546 --RKRGEG----HWEI----LGVMPCMDPPRDDTAQTINEARNLGLRIKMLTGDAVGIAKETCRQ 600

  Fly   639 IGVFAE--DEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIVEFLQSMNEISAMT 701
            :|:...  :.:..|....|    |:..:|....|..:..|:.|.||||.::||.||:...:.|||
Yeast   601 LGLGTNIYNAERLGLGGGG----DMPGSELADFVENADGFAEVFPQHKYRVVEILQNRGYLVAMT 661

  Fly   702 GDGVNDAPALKKAEIGIAMGSGTAVAKSAAEMVLADDNFSSIVSAVEEGRAIYNNMKQFIRYLIS 766
            ||||||||:||||:.|||:...|..|:|||::|......|:|:.|::..|.|::.|..::.|.|:
Yeast   662 GDGVNDAPSLKKADTGIAVEGATDAARSAADIVFLAPGLSAIIDALKTSRQIFHRMYSYVVYRIA 726

  Fly   767 SNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPRKADEGLISG 831
                  :|:.|...||          ||:.::.:.|....:.|                      
Yeast   727 ------LSLHLEIFLG----------LWIAILNNSLDINLIVF---------------------- 753

  Fly   832 WLFFRYMAIGFYVGAATVGAAAWWFVFSDEGPKLSYWQLTHHLSCLGGGDEFKGVDCKIFSDPHA 896
                    |..:...||:..|   :..:...|:...|.|..    |.|.....|:...|.|....
Yeast   754 --------IAIFADVATLTIA---YDNAPYAPEPVKWNLPR----LWGMSIILGIVLAIGSWITL 803

  Fly   897 MTMALSVLVTIEMLNAMN-------SLSENQSLITMPPWCNLWLI---------GSMALSFTLHF 945
            .||.|.....|:...|||       ||:||            |||         .|...|:.|..
Yeast   804 TTMFLPNGGIIQNFGAMNGVMFLQISLTEN------------WLIFVTRAAGPFWSSIPSWQLAG 856

  Fly   946 VILYVDVLSTVFQVTPLSAEEWITVM 971
            .:..||:::|:|.:....:|.|..::
Yeast   857 AVFAVDIIATMFTLFGWWSENWTDIV 882

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SERCANP_726381.1 P-type_ATPase_SERCA 5..989 CDD:319778 253/1000 (25%)
PMA2NP_015289.1 P-type_ATPase_H 116..903 CDD:319771 248/982 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157341399
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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