DRSC/TRiP Functional Genomics Resources

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Protein Alignment SERCA and PMCA

DIOPT Version :10

Sequence 1:NP_726381.1 Gene:SERCA / 49297 FlyBaseID:FBgn0263006 Length:1020 Species:Drosophila melanogaster
Sequence 2:NP_001014689.3 Gene:PMCA / 43787 FlyBaseID:FBgn0259214 Length:1255 Species:Drosophila melanogaster


Alignment Length:1105 Identity:293/1105 - (26%)
Similarity:478/1105 - (43%) Gaps:224/1105 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 TDPERGLTLDQIKANQKK--YGPNELPTEEGKSIWQLVLEQFDDLLVKILLLAAIISFVLALFE- 79
            |.|..||:..:.....::  :|.|.:|.:..|:...||.|...|:.:.||.:||::|..|:.:: 
  Fly    48 TSPNEGLSGSKADEEHRRETFGSNVIPPKPPKTFLTLVWEALQDVTLIILEVAALVSLGLSFYKP 112

  Fly    80 --------EHEETFTAFVEPLVILLILIANAVVGVW-------QERNAESAIEALKEYEPEMGKV 129
                    :.||....::|.|.||:.:|...:|..:       |.|..::.||...::....|..
  Fly   113 ADEDAPVLQEEEEHHGWIEGLAILISVIVVVIVTAFNDYSKERQFRGLQNRIEGEHKFSVIRGGE 177

  Fly   130 VRQDKSGIQKVRAKEIVPGDLVEVSVGDKIPADIRITHIYSTTLRIDQSILTGESVSVIKHTDAI 194
            |.|...|       :|:.||:.:|..||.:|||..:  |.|..|::|:|.|||||..|.|..|..
  Fly   178 VCQISVG-------DILVGDIAQVKYGDLLPADGCL--IQSNDLKVDESSLTGESDHVKKGPDVD 233

  Fly   195 PDPRAVNQDKKNILFSGTNVAAGKARGVVIGTGLSTAIG------------------KIRTEMSE 241
            |           ::.|||:|..|..:.||...|:::..|                  |::.|...
  Fly   234 P-----------MVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGAAVDEQEAEIKKMKKEAKR 287

  Fly   242 -----------------------------TEEI--------------------------KTPLQQ 251
                                         |.||                          |:.||.
  Fly   288 ANKQKNLTGENDGRSQIKGSQAPSQRETVTSEITKSESEGNHLPQSSSSGAAETGHKKEKSVLQA 352

  Fly   252 KLDEFGEQLSKVISVICVAVWAINIGHF-------NDPAHGGSWIKGAIYYFKIAVALAVAAIPE 309
            ||.:...|:....|.|.|....|.|..|       ::.....::....:.:..|.|.:.|.|:||
  Fly   353 KLTKLAIQIGYAGSTIAVLTVIILIIQFCIKTFVIDEKPWKNTYANNLVKHLIIGVTVLVVAVPE 417

  Fly   310 GLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFIFDKVEG 374
            |||..:|..||...::|.|.|.:||.|.:.||:|..:.||||||||||||:|:|.:.:|.:|:  
  Fly   418 GLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSYICEKL-- 480

  Fly   375 NDSSFLEFEMTGSTYEPIGEVFLNGQRIKAADYDTLQELSTICIMCNDSAIDYNEFKQAFEKVGE 439
                ...........:.:|.:...|..:.:|        .|..||...:..|..      .:||.
  Fly   481 ----CKVLPTLSDIPQHVGNLITMGISVNSA--------YTSNIMAGHNPGDLP------IQVGN 527

  Fly   440 ATETALIVLAEKLNSFSVNKSGLDRRSAAIACRGEI-ETKWKKEFTLEFSRDRKSMSSYCTPLKA 503
            .||.||:...:.|        |:..:|    .|.|| |.|:.:.:|  |:..||||.:.     .
  Fly   528 KTECALLGFVQGL--------GVKYQS----IRDEITEDKFTRVYT--FNSVRKSMGTV-----I 573

  Fly   504 SRLGTGPKLFVKGAPEGVLERCT--HARVGTTKVPLTSALKAKILALTGQYGTGRDTLRCLALAV 566
            .|...|.:|:.|||.|.::::|.  :...||.: ..|..::.:::....: ....|.||.:::|.
  Fly   574 PRPNGGYRLYTKGASEIIMKKCAFIYGHEGTLE-KFTRDMQERLIREVIE-PMACDGLRTISVAY 636

  Fly   567 AD-SPMKP--DEMDLGDSTKFYQYE---VNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVIT 625
            .| .|.|.  :|:.:.....:...|   .|||.:.|||:.||.|.||.|:|.:|:.|||.|.::|
  Fly   637 RDFVPGKAAINEVHIDGEPNWDDEENIMTNLTCLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVT 701

  Fly   626 GDNKATAEAICRRIGVFAEDED---TTGKSYSGREFDDLSPTEQ---KAAVARSRLFSRVEPQHK 684
            |||..||.:|..:.|:...::|   ..||.::.|..|.....:|   .....:.|:.:|..|..|
  Fly   702 GDNINTARSIASKCGILRPNDDFLILEGKEFNRRIRDSNGDIQQHLIDKVWPKLRVLARSSPTDK 766

  Fly   685 SKIVE-----FLQSMNEISAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKSAAEMVLADDNFSSI 743
            ..:|:     .:....|:.|:||||.||.||||||::|.||| :||.|||.|::::|.|||||||
  Fly   767 YTLVKGIIDSTVSENREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSI 831

  Fly   744 VSAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALG 808
            |.||..||.:|:::.:|:::.::.|:..|:..|:.|.......|..||:|||||:.|.|.:.||.
  Fly   832 VKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALA 896

  Fly   809 FNPPDLDIMEKPPRKADEGLISGWLFFRYMAIGFY-----VGAATVGAAAWWFVFSDEGPKLSYW 868
            ...|..|::.:.|....:.|||..:....:....|     .|...||..    :...|.      
  Fly   897 TEFPTPDLLLRKPYGRTKPLISRTMMKNILGQALYQLIIIFGLLFVGDV----ILDIES------ 951

  Fly   869 QLTHHLSCLGGGDEFKGVDCKIFSDPHAMTMALSVLVTIEMLNAMNSLSEN------QSLITMPP 927
                     |.|.|......:.|      |:..:..|.:.:.|.:|:...:      :.|:|.|.
  Fly   952 ---------GRGQELNAGPTQHF------TIIFNTFVMMTLFNEINARKIHGQRNVIEGLLTNPI 1001

  Fly   928 WCNLWLIGSMALSFTLHFVILYVDVLSTVFQVTPLSAEEWITVMKFSIPVVLLDETLKFV-ARKI 991
            :..:|:       ||:...:|.:......|....|:.::|:..:.|.|..::..:.:..| .||:
  Fly  1002 FYTIWI-------FTMISQVLIIQYGKMAFSTKALTLDQWLWCIFFGIGTLVWGQLITSVPTRKL 1059

  Fly   992  991
              Fly  1060  1059

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SERCANP_726381.1 P-type_ATPase_SERCA 5..989 CDD:319778 291/1101 (26%)
PMCANP_001014689.3 P-type_ATPase_Ca_PMCA-like 62..921 CDD:319776 261/919 (28%)
Cation_ATPase_C 873..1051 CDD:376368 43/209 (21%)
ATP_Ca_trans_C 1096..1141 CDD:463575
Blue background indicates that the domain is not in the aligned region.

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