DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SERCA and pmr1

DIOPT Version :9

Sequence 1:NP_726381.1 Gene:SERCA / 49297 FlyBaseID:FBgn0263006 Length:1020 Species:Drosophila melanogaster
Sequence 2:NP_595098.1 Gene:pmr1 / 2540383 PomBaseID:SPBC31E1.02c Length:899 Species:Schizosaccharomyces pombe


Alignment Length:1005 Identity:329/1005 - (32%)
Similarity:519/1005 - (51%) Gaps:151/1005 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TVEQSLNFFGTDPERGL-TLDQIKANQKKYGPNELPTEEGKSIWQLVLEQF-DDLLVKILLLAAI 70
            :|||:.....||...|| :|.:|....|.:|.|:|..|:.:::....|:|| .|.|:.:|..::.
pombe     9 SVEQTCADLETDMYNGLSSLQEITRRNKVHGDNDLKVEDEENMVVQFLKQFVKDPLILLLFASSA 73

  Fly    71 ISFVLALFEEHEETFTAFVEPLVILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVVRQDKS 135
            ||..|...:          :.:.|.|.::....||..||..:|.:::||....|....|:|..|:
pombe    74 ISVTLGNID----------DAISIALAIVIVVTVGFVQEYRSEQSLKALNNLVPHYCNVIRSGKT 128

  Fly   136 GIQKVRAKEIVPGDLVEVSVGDKIPADIRITHIYSTTLRIDQSILTGESVSVIKHTDAIPDPRAV 200
              :.:.|.::||||||.:.:||::|||:||  :.:|.|.||:|.||||:....|.::||....::
pombe   129 --EHIVASKLVPGDLVILQIGDRVPADLRI--VEATELEIDESNLTGENSPRKKSSEAISSNISL 189

  Fly   201 NQDKKNILFSGTNVAAGKARGVVIGTGLSTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVIS 265
            . ::.||.|.||.|..|..||:|:.||..|..|::...|.:||:.|||||..:|:.|:||| :||
pombe   190 T-ERNNIAFMGTLVRHGHGRGIVVATGSDTEFGRVFLTMQQTEKPKTPLQNSMDDLGKQLS-LIS 252

  Fly   266 VICVAVWAINIGHFNDPAHGGSWIKGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKN 330
            :|.:|| .:.:|.|    .|.:|::    ...|.|:|||||||||||.::|..||||..||:||.
pombe   253 LIGIAV-IVLVGFF----QGKNWLE----MLTIGVSLAVAAIPEGLPIIVTVTLALGVLRMSKKR 308

  Fly   331 AIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFIFDKVEG---NDSSFLEFEMTGSTYEPI 392
            ||:|.||||||||..:|||||||||||.|.|:|::::....:..   .:|..:|.    |....:
pombe   309 AIIRRLPSVETLGSVNVICSDKTGTLTMNHMTVTKIYTCGMLAAFSLPESEHIEL----SVRRTV 369

  Fly   393 GEVFLNGQRIKAADYDTLQELSTICIMCNDSAIDYNEFKQAFEK----VGEATETALIVLAEKLN 453
            |                :::......:||:|.: :|:.....:.    .|...:.|||..:|:. 
pombe   370 G----------------IEKALLAAALCNNSKV-HNKADSILDTTCPWAGFPVDVALIECSERF- 416

  Fly   454 SFSVNKSGL-DRRSAAIACRGEIETKWKKEFTLEFSRDRKSMSSYCTPLKASRLGTGPKLFVKGA 517
                   || |.|          || :.:...:.||.:||.| |......:|::.     |:|||
pombe   417 -------GLKDPR----------ET-YSRISEVSFSSERKYM-SVAVQYNSSKMN-----FMKGA 457

  Fly   518 PEGVLERCTH-ARVGTTKVPLTSALKAKI------LALTGQYGTGRDTLRCLALAVADSPMKPDE 575
            .|.||..|.: :.....:..||:.:|..|      :|.:|        ||.:|:|...:..|   
pombe   458 TEQVLSSCAYFSDQDGVQHELTAEMKENIQRNEFEMAASG--------LRIIAVASGINTNK--- 511

  Fly   576 MDLGDSTKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIG 640
                           |.|.|:.|:.||||.:|.:|:......|:|||:||||:..||.:|.|.:|
pombe   512 ---------------LVFHGLFGINDPPRPQVRESVQYLMTGGVRVIMITGDSVVTAISIARSLG 561

  Fly   641 --VFAEDEDTTGKSY--SGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIVEFLQSMNEISAMT 701
              :.:.||:.. ::|  :|.:.|||..:..:.||:|..:|:|..||||.||||.|||:.::.|||
pombe   562 MAIPSNDEEAI-RNYALTGAQLDDLDSSSLRDAVSRVVVFARTTPQHKMKIVEALQSLGDVVAMT 625

  Fly   702 GDGVNDAPALKKAEIGIAMG-SGTAVAKSAAEMVLADDNFSSIVSAVEEGRAIYNNMKQFIRYLI 765
            |||||||||||.|:|||||| .||.|||.||:|:|.||:|::|:||||||:.|:||:|.||.:.:
pombe   626 GDGVNDAPALKLADIGIAMGRQGTDVAKEAADMILTDDSFATILSAVEEGKGIFNNIKNFITFQL 690

  Fly   766 SSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPRKADEGLIS 830
            |:::..:..|.:::..|....|..:|:||:|::.||.||.:||....|.|:|.||||..:..:||
pombe   691 STSVAALSLIAISSVFGFQNPLNAMQILWINILMDGPPAQSLGVESVDEDVMMKPPRPRNAPIIS 755

  Fly   831 GWLFFRYMAIGFYVGAATVGAAAWWFVFSDEGPKLSYWQLTHHLSCLGGGDEFKGVDCKIFSDPH 895
            ..|..|.:...|.:...|:                    :...:....|....:..         
pombe   756 VQLLQRVLLSAFIIVTVTI--------------------VVFRVQMQDGNVTARDT--------- 791

  Fly   896 AMTMALSVLVTIEMLNAMNSLSENQSLITMPPWCNLWLIGSMALSFTLHFVILYVDVLSTVFQVT 960
              ||..:..|..:|.||:...||.:|:..:..:.|.....::..|.....:::|......:||..
pombe   792 --TMTFTCFVFFDMFNALACRSETKSVFKLGIFSNRMFNIAVGGSLIGQALVVYASPFQRIFQTE 854

  Fly   961 PLSAEEWITVMKFSIPVVLLDETLKFVARK 990
            .:..::.:.::..:..|:.:||..|:..|:
pombe   855 AIGLKDVLILLACTSSVLWVDEIRKWYRRR 884

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SERCANP_726381.1 P-type_ATPase_SERCA 5..989 CDD:319778 328/1002 (33%)
pmr1NP_595098.1 ATPase-IIA2_Ca 2..886 CDD:130585 329/1005 (33%)
Cation_ATPase_N 5..75 CDD:279080 20/65 (31%)
E1-E2_ATPase 87..318 CDD:278548 103/245 (42%)
Cation_ATPase 380..467 CDD:289987 30/112 (27%)
COG4087 <599..671 CDD:226572 47/71 (66%)
Cation_ATPase_C 711..880 CDD:279079 42/199 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0202
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53587
OrthoFinder 1 1.000 - - FOG0000231
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100158
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.720

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