DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SERCA and Atp2c1

DIOPT Version :9

Sequence 1:NP_726381.1 Gene:SERCA / 49297 FlyBaseID:FBgn0263006 Length:1020 Species:Drosophila melanogaster
Sequence 2:NP_001240760.1 Gene:Atp2c1 / 235574 MGIID:1889008 Length:952 Species:Mus musculus


Alignment Length:1000 Identity:338/1000 - (33%)
Similarity:514/1000 - (51%) Gaps:150/1000 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VEQSLNFFGTDPERGLTLDQIKANQKKYGPNELPTEEGKSIWQLVLEQFDDLLVKILLLAAIISF 73
            |.:.......|.:.||...::...:..:|.||....|.:.:|:..:.||.:.|:.:||.:|:||.
Mouse    65 VSEVAGLLQADLQNGLNKSEVSHRRAFHGWNEFDISEDEPLWKKYISQFKNPLIMLLLASAVISI 129

  Fly    74 VLALFEEHEETFTAFVEPLVILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVVRQDKSGIQ 138
            ::..|::       .|...|.::|::..|.|   ||..:|.::|.|.:..|.....||:.|  ::
Mouse   130 LMRQFDD-------AVSITVAIVIVVTVAFV---QEYRSEKSLEELSKLVPPECHCVREGK--LE 182

  Fly   139 KVRAKEIVPGDLVEVSVGDKIPADIRITHIYSTTLRIDQSILTGESVSVIKHTDAIPDPRAVNQD 203
            ...|:::||||.|.:||||::|||:|:  ..:..|.:|:|.||||:....|.|  .|.| |.|.|
Mouse   183 HTLARDLVPGDTVCLSVGDRVPADLRL--FEAVDLSVDESSLTGETAPCSKVT--APQP-AANGD 242

  Fly   204 ---KKNILFSGTNVAAGKARGVVIGTGLSTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLS---- 261
               :.||.|.||.|..|||:|:|||||.::..|::...|...|..|||||:.:|..|:|||    
Mouse   243 LASRSNIAFMGTLVRCGKAKGIVIGTGENSEFGEVFKMMQAEEAPKTPLQKSMDLLGKQLSFYSF 307

  Fly   262 KVISVICVAVWAINIGHFNDPAHGGSWIKGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM 326
            .:|.:|.:..|.:.              |..:..|.|:|:|||||||||||.|:|..||||..||
Mouse   308 GIIGIIMLVGWLLG--------------KDILEMFTISVSLAVAAIPEGLPIVVTVTLALGVMRM 358

  Fly   327 AKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFIFDKVEGNDSSFLEFEMTGSTYEP 391
            .||.|||:.||.||||||.:|||||||||||.|:|:|:.:...|.        |..|:||..|..
Mouse   359 VKKRAIVKKLPIVETLGCCNVICSDKTGTLTKNEMTVTHILTSDG--------LHAEVTGVGYNQ 415

  Fly   392 IGEVFLNGQRIKAADYDTLQELSTICIMCNDSAIDYNEFKQAFEKVGEATETALIVLAEKLNSFS 456
            .|||.::|..:.......:..:.....:|||:.|..|..      :|:.||.|||.||.|:    
Mouse   416 FGEVIVDGDVVHGFYNPAVSRIVEAGCVCNDAVIRNNTL------MGKPTEGALIALAMKM---- 470

  Fly   457 VNKSGLDRRSAAIACRGEIETKWKKEFTLEFSRDRKSMSSYCT-PLKASRLGTGPKL-FVKGAPE 519
                |||          .::..:.::....||.::|.|:..|. ..:..|    |:: |:|||.|
Mouse   471 ----GLD----------GLQQDYIRKAEYPFSSEQKWMAVKCVHRTQQDR----PEICFMKGAYE 517

  Fly   520 GVLERCTHARVGTTKVPLTSALKAKILALTGQY---------GTGRDTLRCLALAVADSPMKPDE 575
            .|::.||           |...|.:.||||.|.         ..|...||.|||  |..|     
Mouse   518 QVIKYCT-----------TYNSKGQTLALTQQQRDLYQQEKARMGSAGLRVLAL--ASGP----- 564

  Fly   576 MDLGDSTKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIG 640
             :||          .|||:|:||::||||..|.:::....|:|:.:.:||||::.||.||..|:|
Mouse   565 -ELG----------QLTFLGLVGIIDPPRTGVKEAVTTLIASGVSIKMITGDSQETAIAIASRLG 618

  Fly   641 VFAEDEDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIVEFLQSMNEISAMTGDGV 705
            ::::    |.:|.||.|.|.:........|.:..:|.|..|:||.||::.||....:.|||||||
Mouse   619 LYSK----TSQSVSGEEVDTMEVQHLSQIVPKVAVFYRASPRHKMKIIKSLQKNGAVVAMTGDGV 679

  Fly   706 NDAPALKKAEIGIAMG-SGTAVAKSAAEMVLADDNFSSIVSAVEEGRAIYNNMKQFIRYLISSNI 769
            |||.|||.|:||:||| :||.|.|.||:|:|.||:|.:|:||:|||:.||||:|.|:|:.:|::|
Mouse   680 NDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSI 744

  Fly   770 GEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPRKADEGLISGWLF 834
            ..:..|.|...:..|..|..:|:||:|::.||.||.:||..|.|.|::.||||...:.:::..|.
Mouse   745 AALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLI 809

  Fly   835 FRYMAIGFYVGAATVGAAAWWFVFSDEGPKLSYWQLTHHLSCLGGGDEFKGVDCKIFSDPHAMTM 899
            .:.:.....:...|:      |||         |:            |.:  |..|  .|...||
Mouse   810 LKILVSSIIIVCGTL------FVF---------WR------------ELR--DNVI--TPRDTTM 843

  Fly   900 ALSVLVTIEMLNAMNSLSENQSLITMPPWCNLWLIGSMALSFTLHFVILYVDVLSTVFQVTPLSA 964
            ..:..|..:|.||::|.|:.:|:..:....|.....::..|.....:::|...|..|||...||.
Mouse   844 TFTCFVFFDMFNALSSRSQTKSVFEIGLCSNKMFCYAVLGSIMGQLLVIYFPPLQKVFQTESLSI 908

  Fly   965 EEWITVMKFSIPVVLLDETLKFVAR 989
            .:.:.::..:..|.::.|.:|.|.|
Mouse   909 LDLLFLLGLTSSVCIVSEIIKKVER 933

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SERCANP_726381.1 P-type_ATPase_SERCA 5..989 CDD:319778 337/998 (34%)
Atp2c1NP_001240760.1 ATPase-IIA2_Ca 57..936 CDD:130585 337/999 (34%)
Cation_ATPase_N 60..128 CDD:279080 15/62 (24%)
E1-E2_ATPase 152..372 CDD:278548 99/243 (41%)
Cation_ATPase 443..526 CDD:289987 32/121 (26%)
COG4087 589..712 CDD:226572 55/126 (44%)
Cation_ATPase_C 759..931 CDD:279079 50/202 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0202
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53587
OrthoDB 1 1.010 - - D100699at2759
OrthoFinder 1 1.000 - - FOG0000231
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100158
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.730

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