DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SERCA and Atp13a3

DIOPT Version :9

Sequence 1:NP_726381.1 Gene:SERCA / 49297 FlyBaseID:FBgn0263006 Length:1020 Species:Drosophila melanogaster
Sequence 2:NP_001121568.1 Gene:Atp13a3 / 224088 MGIID:2685387 Length:1249 Species:Mus musculus


Alignment Length:1147 Identity:243/1147 - (21%)
Similarity:431/1147 - (37%) Gaps:320/1147 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 GLTLDQIKANQKKYGPNELPTEEGKSIWQLVLEQFDDLLVKILLLAAIISFVLALFEEHEETFTA 87
            |||.......:..||.||:..:. .|:::|::::    ::....:..:.|.:|...:|:      
Mouse   174 GLTQGMHAYRKLIYGVNEIAVKV-PSVFKLLIKE----VLNPFYIFQLFSVILWSVDEY------ 227

  Fly    88 FVEPLVILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVVRQDKSGIQKVRAKEIVPGDLVE 152
            :...|.|:::.:.:.:..::..|.....:..:......:...|.::...|:::.:.::||||::.
Mouse   228 YYYALAIVIMSVVSIISSLYSIRKQYVMLHDMVATHSTVRVSVCRENEEIEEIFSTDLVPGDVMI 292

  Fly   153 VSV-GDKIPADIRITHIYSTTLRIDQSILTGESVSVIKHTDAIPDP----RAVNQD-------KK 205
            :.: |..:|.|   ..:.:.|..:::|:||||||.|.|..  :|:|    :.:.::       |:
Mouse   293 IPLNGTVMPCD---AVLINGTCIVNESMLTGESVPVTKTN--LPNPSVDVKGMGEEQYSPETHKR 352

  Fly   206 NILFSGTNVAAGK------ARGVVIGTGLSTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVI 264
            :.||.||.|...:      .:.:|:.||.||:.|::         :::.|..|..:|.......:
Mouse   353 HTLFCGTTVIQTRFYTGELVKAIVVRTGFSTSKGQL---------VRSILYPKPTDFKLYRDAYL 408

  Fly   265 SVICVAVWAINIGH--------FNDPAHGGSWIKGAIYYFKIAVALAVAAIPEGLPAVITTCLAL 321
            .::|:.|.| .||.        .|:.......||        ::.:....:|..|||.:|..:..
Mouse   409 FLLCLVVVA-GIGFIYTIINSILNEKEVQEIIIK--------SLDIITITVPPALPAAMTAGIVY 464

  Fly   322 GTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFIFDKVEGNDSSFLEFEMTG 386
            ..||:.|......|...:...|..:::|.|||||||.:.:.   ::...:||  ::.||..|   
Mouse   465 AQRRLKKVGIFCISPQRINICGQLNLVCFDKTGTLTEDGLD---LWGIQRVE--NTRFLLPE--- 521

  Fly   387 STYEPIGEVFLNGQRIKAADYDTLQELSTICIMCNDSAIDYNEFKQAFEKVG----EATETALIV 447
              .....|:.:..|.:  |...|...|:.|..:.:...:|.    :.||.:|    ||||     
Mouse   522 --DNVCSEMLVKSQFV--ACMATCHSLTKIEGVLSGDPLDL----KMFEAIGWILEEATE----- 573

  Fly   448 LAEKLNSFSVNKSGLDRRSAAIACR------GEIETKWKKEFTL---------------EFSRDR 491
                      .::.|..|......|      .|..|...:|..|               .||...
Mouse   574 ----------EETALHNRIMPTVVRPSKQLLPEPTTAGNQEMELFELPAIYEIGIVRQFPFSSAL 628

  Fly   492 KSMSSYCTPLKASRLGTGPKLFVKGAPEGVLERCTHARVGTTKVPLTSALKAKILALTGQYGTGR 556
            :.||.....|...|:..    ::|||||.|...|   :..|..|.....|:        .|  .:
Mouse   629 QRMSVVARTLGEKRMDA----YMKGAPEVVASLC---KPETVPVDFEKVLE--------DY--TK 676

  Fly   557 DTLRCLALAVADSPMKPDEMDLGDSTKFYQ--------YEVNLTFVGVVGMLDPPRKEVFDSIVR 613
            ...|.:|||         ...|.....:::        .|.|:.|:|::.|.:..::|....:..
Mouse   677 QGFRVIALA---------HRKLESKLTWHKVQHISRDAIENNMDFMGLIIMQNKLKQETPAVLED 732

  Fly   614 CRAAGIRVIVITGDNKATAEAICRRIGVF------------------------------------ 642
            ...|.||.:::||||..||.::.|..|:.                                    
Mouse   733 LHKANIRTVMVTGDNMLTAVSVARDCGMILPQDKVIIAEALPPKDGKVAKINWHYTDSLSQCSES 797

  Fly   643 ----------------AEDEDTT-------GKSYSG--REFDDLSPTEQKAAVARSRLFSRVEPQ 682
                            .||.:.|       |||:|.  ..|.||.|    ..:....:|:|:.|.
Mouse   798 SAIDSEAIPIKLAHDSLEDLEVTRYHFAMNGKSFSVILEHFQDLVP----KLMLHGTVFARMAPD 858

  Fly   683 HKSKIVEFLQSMNEISAMTGDGVNDAPALKKAEIGIAMGSGTAVAKSAAEMVLADDNFSSIVSAV 747
            .|:::||.||:::....|.|||.||..|||:|..||::..  ..|..|:.......:.|.:.:.:
Mouse   859 QKTQLVEALQNVDYFVGMCGDGANDCGALKRAHGGISLSE--LEASVASPFTSKTPSISCVPNLI 921

  Fly   748 EEGR-------------AIYNNMKQF---IRYLISSNIGEVVSIFLTAALGL----PEALIPVQL 792
            .|||             |:|:.::.|   :.|.|.||:|:...:|:..|:.|    ..:|.|.  
Mouse   922 REGRAALMTSFCVFKFMALYSIIQYFSVTLLYSILSNLGDFQFLFIDLAIILVVVFTMSLNPA-- 984

  Fly   793 LWVNLVTDGLPATALGFNPPDLDIMEKPPRKADEGLISGWLFFRYMA-IGFYVGAATVGAAAWW- 855
             |..||.                  ::||    .|||||.|.|..:: |...||..::|  .:| 
Mouse   985 -WKELVA------------------QRPP----SGLISGALLFSVLSQIVISVGFQSLG--FFWV 1024

  Fly   856 --FVFSDEG------PKLSYWQLTHHLSCLGGGDEFKGVDCKIFSDPHAMTMALSVLVTIEMLNA 912
              :...|..      .:.:.|..:|    |..|.|..  .|||.:..:.....:|   :.:.|..
Mouse  1025 KQYKVCDPNSDVCNTTRSACWNSSH----LYNGTELD--SCKIQNYENTTVFFIS---SFQYLTV 1080

  Fly   913 MNSLSENQSLITMPPWCNLWLIGSMALSFTLHFVILYVDVL-------STVFQVTPLSA--EEW- 967
            ..:.|:.:. ...|.:.|.:        |.:..:||||.:|       ::|.||..:..  .:| 
Mouse  1081 AVAFSKGKP-FRQPCYKNYF--------FVISVIILYVFILFIMLHPVASVDQVLEIMCVPYQWR 1136

  Fly   968 --------------ITVMKFSIPVVLLDETLKFVARKIADGE 995
                          |||..|.:..||    .|.|..:...||
Mouse  1137 IYMLIIVLINAFVSITVESFFLDTVL----WKVVFNRDKQGE 1174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SERCANP_726381.1 P-type_ATPase_SERCA 5..989 CDD:319778 241/1139 (21%)
Atp13a3NP_001121568.1 P-ATPase-V 14..1142 CDD:273738 233/1109 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.