DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SERCA and sca-1

DIOPT Version :9

Sequence 1:NP_726381.1 Gene:SERCA / 49297 FlyBaseID:FBgn0263006 Length:1020 Species:Drosophila melanogaster
Sequence 2:NP_499386.1 Gene:sca-1 / 176512 WormBaseID:WBGene00004736 Length:1059 Species:Caenorhabditis elegans


Alignment Length:1000 Identity:739/1000 - (73%)
Similarity:848/1000 - (84%) Gaps:9/1000 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDGHSKTVEQSLNFFGTDPERGLTLDQIKANQKKYGPNELPTEEGKSIWQLVLEQFDDLLVKIL 65
            |||.|:|...:...||||.|| |||..|::..:.|||.||:|.|||||:|:|:||||||||||||
 Worm     1 MEDAHAKDANEVCKFFGTGPE-GLTPQQVETLRNKYGENEMPAEEGKSLWELILEQFDDLLVKIL 64

  Fly    66 LLAAIISFVLALFEEHE---ETFTAFVEPLVILLILIANAVVGVWQERNAESAIEALKEYEPEMG 127
            |||||||||||||||||   |..||||||.||||||||||.|||||||||||||||||||||||.
 Worm    65 LLAAIISFVLALFEEHEDQTEAVTAFVEPFVILLILIANATVGVWQERNAESAIEALKEYEPEMA 129

  Fly   128 KVVRQDKSGIQKVRAKEIVPGDLVEVSVGDKIPADIRITHIYSTTLRIDQSILTGESVSVIKHTD 192
            ||:|....|||.|||||:|||||||||||||||||:|:..|||||:|||||||||||||||||||
 Worm   130 KVIRSGHHGIQMVRAKELVPGDLVEVSVGDKIPADLRLVKIYSTTIRIDQSILTGESVSVIKHTD 194

  Fly   193 AIPDPRAVNQDKKNILFSGTNVAAGKARGVVIGTGLSTAIGKIRTEMSETEEIKTPLQQKLDEFG 257
            ::||||||||||||.||||||||:|||||:|.||||:|.||||||||:|||..||||||||||||
 Worm   195 SVPDPRAVNQDKKNCLFSGTNVASGKARGIVFGTGLTTEIGKIRTEMAETENEKTPLQQKLDEFG 259

  Fly   258 EQLSKVISVICVAVWAINIGHFNDPAHGGSWIKGAIYYFKIAVALAVAAIPEGLPAVITTCLALG 322
            |||||||||||||||||||||||||||||||:|||||||||||||||||||||||||||||||||
 Worm   260 EQLSKVISVICVAVWAINIGHFNDPAHGGSWVKGAIYYFKIAVALAVAAIPEGLPAVITTCLALG 324

  Fly   323 TRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFIFDKVEGNDSSFLEFEMTGS 387
            ||||||||||||||||||||||||||||||||||||||||||:|||..:..|::.:|.||.::||
 Worm   325 TRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSKMFIAGQASGDNINFTEFAISGS 389

  Fly   388 TYEPIGEVFLNGQRIK--AADYDTLQELSTICIMCNDSAIDYNEFKQAFEKVGEATETALIVLAE 450
            ||||:|:|..||:.|.  |.::::|.||:.||.|||||::||||.|:.:||||||||||||||||
 Worm   390 TYEPVGKVSTNGREINPAAGEFESLTELAMICAMCNDSSVDYNETKKIYEKVGEATETALIVLAE 454

  Fly   451 KLNSFSVNKSGLDRRSAAIACRGEIETKWKKEFTLEFSRDRKSMSSYCTPLKASRLGTGPKLFVK 515
            |:|.|..:|:||..:.....|...|:.||||||||||||||||||:||.|...   |:|.|:|||
 Worm   455 KMNVFGTSKAGLSPKELGGVCNRVIQQKWKKEFTLEFSRDRKSMSAYCFPASG---GSGAKMFVK 516

  Fly   516 GAPEGVLERCTHARVGTTKVPLTSALKAKILALTGQYGTGRDTLRCLALAVADSPMKPDEMDLGD 580
            |||||||.||||.||...|||||||:..||:....||||||||||||||...|:|:....|:|.|
 Worm   517 GAPEGVLGRCTHVRVNGQKVPLTSAMTQKIVDQCVQYGTGRDTLRCLALGTIDTPVSVSNMNLED 581

  Fly   581 STKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGVFAED 645
            ||:|.:||.::|||||||||||||.||.|||..|..||||||:||||||.|||||.||||:|.|:
 Worm   582 STQFVKYEQDITFVGVVGMLDPPRTEVSDSIKACNHAGIRVIMITGDNKNTAEAIGRRIGLFGEN 646

  Fly   646 EDTTGKSYSGREFDDLSPTEQKAAVARSRLFSRVEPQHKSKIVEFLQSMNEISAMTGDGVNDAPA 710
            ||||||:|:|||||||.|.:|..|..|::||:||||.||||||:.|||..||:||||||||||||
 Worm   647 EDTTGKAYTGREFDDLPPEQQSEACRRAKLFARVEPSHKSKIVDILQSQGEITAMTGDGVNDAPA 711

  Fly   711 LKKAEIGIAMGSGTAVAKSAAEMVLADDNFSSIVSAVEEGRAIYNNMKQFIRYLISSNIGEVVSI 775
            ||||||||:|||||||||||:|||||||||:|||||||||||||||||||||||||||:||||||
 Worm   712 LKKAEIGISMGSGTAVAKSASEMVLADDNFASIVSAVEEGRAIYNNMKQFIRYLISSNVGEVVSI 776

  Fly   776 FLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPRKADEGLISGWLFFRYMAI 840
            |:.||||:||||||||||||||||||||||||||||||||||::.||.|::|||||||||||:|:
 Worm   777 FMVAALGIPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRHPRSANDGLISGWLFFRYLAV 841

  Fly   841 GFYVGAATVGAAAWWFVFSDEGPKLSYWQLTHHLSCLGGGDEFKGVDCKIFSDPHAMTMALSVLV 905
            |.|||.|||||:.|||:..:|||:::|:||||.:.|....|.|..:||.:|.|.|...|||||||
 Worm   842 GTYVGVATVGASMWWFLLYEEGPQITYYQLTHWMRCEIEPDNFADLDCAVFEDNHPNAMALSVLV 906

  Fly   906 TIEMLNAMNSLSENQSLITMPPWCNLWLIGSMALSFTLHFVILYVDVLSTVFQVTPLSAEEWITV 970
            |||||||:|||||||||:.||||.|:||:.:::||.:|||||||||:::|:||:|||:..|||.|
 Worm   907 TIEMLNAINSLSENQSLLVMPPWKNIWLMAAISLSMSLHFVILYVDIMATIFQITPLNWVEWIAV 971

  Fly   971 MKFSIPVVLLDETLKFVARKIADGE 995
            :|.|:||:||||.|||:||...||:
 Worm   972 LKISLPVLLLDEILKFIARNYIDGK 996

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SERCANP_726381.1 P-type_ATPase_SERCA 5..989 CDD:319778 732/988 (74%)
sca-1NP_499386.1 Cation_ATPase_N 4..71 CDD:279080 42/67 (63%)
ATPase-IIA1_Ca 52..990 CDD:273452 707/940 (75%)
E1-E2_ATPase 95..342 CDD:278548 220/246 (89%)
Cation_ATPase 423..529 CDD:289987 71/108 (66%)
HAD <607..713 CDD:289480 76/105 (72%)
Cation_ATPase_C 785..988 CDD:279079 138/202 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159437
Domainoid 1 1.000 366 1.000 Domainoid score I485
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7635
Inparanoid 1 1.050 1464 1.000 Inparanoid score I45
Isobase 1 0.950 - 0 Normalized mean entropy S832
OMA 1 1.010 - - QHG53587
OrthoDB 1 1.010 - - D100699at2759
OrthoFinder 1 1.000 - - FOG0000231
OrthoInspector 1 1.000 - - oto17972
orthoMCL 1 0.900 - - OOG6_100158
Panther 1 1.100 - - LDO PTHR42861
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3239
SonicParanoid 1 1.000 - - X745
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.890

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