DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SERCA and atp2b4

DIOPT Version :9

Sequence 1:NP_726381.1 Gene:SERCA / 49297 FlyBaseID:FBgn0263006 Length:1020 Species:Drosophila melanogaster
Sequence 2:XP_002934276.2 Gene:atp2b4 / 100487776 XenbaseID:XB-GENE-960658 Length:1257 Species:Xenopus tropicalis


Alignment Length:1172 Identity:300/1172 - (25%)
Similarity:471/1172 - (40%) Gaps:324/1172 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 TDPERGL--TLDQIKANQKKYGPNELPTEEGKSIWQLVLEQFDDLLVKILLLAAIISFVLALF-- 78
            |.|..||  |...::..::.:|.|.:|.::.|:..|||.|...|:.:.||.:|||||..|:.:  
 Frog    62 TSPTEGLPGTAADLEKRRQTFGQNFIPPKKPKTFLQLVWEALQDVTLIILEIAAIISLGLSFYRP 126

  Fly    79 ---------------EEHEETFTAFVEPLVILLILIANAVVGV---W----QERNAESAIEALKE 121
                           |:..|....::|...|||.::...:|..   |    |.|..:|.||..::
 Frog   127 PGGETEGCGGAAAGAEDEGEAEAGWIEGAAILLSVVCVVLVTAFNDWSKEKQFRGLQSRIEQEQK 191

  Fly   122 YEPEMGKVVRQDKSGIQKVRAKEIVPGDLVEVSVGDKIPADIRITHIYSTTLRIDQSILTGESVS 186
            :....|..|.|       :...|:|.||:.:|..||.:|.|  ...|....|:||:|.|||||..
 Frog   192 FTVVRGSQVIQ-------IPVAEMVVGDIAQVKYGDLLPTD--GIFIQGNDLKIDESSLTGESDQ 247

  Fly   187 VIKHTDAIPDPRAVNQDKKNILFSGTNVAAGKARGVVIGTGLSTAIGKIRTEM--SETEE----- 244
            |.|..|..|           :|.|||:|..|..|.:|...|:::..|.|.|.:  ||.|:     
 Frog   248 VRKSVDKDP-----------MLLSGTHVMEGSGRMLVTAVGVNSQTGIIFTLLGASEAEDEKKDK 301

  Fly   245 ----------------------------------------------------------------- 244
                                                                             
 Frog   302 KGVKKEEGPQLQVGSTHPPSHPPAATDGAAGANAIDNANASLVNGKMQDGNVESIQNKAKQQDGA 366

  Fly   245 -----------------------------IKTPLQQKLDEFGEQLSK---VISVICVAV----WA 273
                                         .|:.||.||.:...|:.|   |:|.|.|.:    :|
 Frog   367 AAMEMQPLKSAEGGDGDDKDKKKSNPHKKEKSVLQGKLTKLAVQIGKAGLVMSAITVIILVLYFA 431

  Fly   274 INIGHFND----PAHGGSWIKGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVR 334
            |:....|.    |.....:|:..:.:|.|.|.:.|.|:|||||..:|..||...::|.|.|.:||
 Frog   432 IDTFVVNKRQWLPECTPIYIQYFVKFFIIGVTVLVVAVPEGLPLAVTISLAYSVKKMMKDNNLVR 496

  Fly   335 SLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFIFDKVEGNDSSFLEFEMTGSTYEPIGEVFLNG 399
            .|.:.||:|..:.||||||||||||:|:|.:.|:      .|..:.|..      :|.|      
 Frog   497 HLDACETMGNATAICSDKTGTLTTNRMTVVQAFV------GDVHYKEIP------DPDG------ 543

  Fly   400 QRIKAADYDTLQELSTICIMCNDSAIDYNEFKQAFEKVGEATETALIVLAEKLNSFSVNKSGLDR 464
              :.|...|.|.....|........:...:......:||..||..|:...            ||.
 Frog   544 --LPAKTLDVLVHAIAINSAYTSKVLPAEKDGGLPRQVGNKTECGLLGFV------------LDL 594

  Fly   465 RSAAIACRGEI-ETKWKKEFTLEFSRDRKSMSSYCTPLKASRLGTGP-KLFVKGAPEGVLERCTH 527
            :......|.:| |.|..|.:|  |:..|||||:      ..:|..|. :::.|||.|.||::|:.
 Frog   595 KRDYQVVRNKIPEEKLYKVYT--FNSVRKSMST------VVKLEDGSYRMYSKGASEIVLKKCSR 651

  Fly   528 ARVGTTKVPLTSALKAKILALTGQYGTGR--------DTLRCLALAVADSPMKPD-----EMDLG 579
            .        |..|.:.:|.....:....:        |.||.:.:|..|.||.|:     |.|: 
 Frog   652 T--------LNEAGEPRIFRPRDRDDMVKNVIEPMACDGLRTICIAYRDFPMSPEPDWDNENDI- 707

  Fly   580 DSTKFYQYEVNLTFVGVVGMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKATAEAICRRIGVFAE 644
                    ..:||.:.|||:.||.|.||.::|.:|:.|||.|.::||||..||.||..:.|:...
 Frog   708 --------VTDLTCLAVVGIEDPVRPEVPEAIRKCQRAGITVRMVTGDNINTARAIAIKCGIIHP 764

  Fly   645 DED---TTGKSYSGREFDDLSPTEQK---AAVARSRLFSRVEPQHKSKIVEFL-----QSMNEIS 698
            .||   ..||.::.|..::....||:   ....:.|:.:|..|..|..:|:.:     ....::.
 Frog   765 GEDFLCIEGKEFNRRIRNEKGEIEQERIDKIWPKLRVLARSSPTDKHTLVKGIIDSTQVEQRQVV 829

  Fly   699 AMTGDGVNDAPALKKAEIGIAMG-SGTAVAKSAAEMVLADDNFSSIVSAVEEGRAIYNNMKQFIR 762
            |:||||.||.||||||::|.||| :||.|||.|::::|.||||:|||.||..||.:|:::.:|::
 Frog   830 AVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQ 894

  Fly   763 YLISSNIGEVVSIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMEKPPRKADEG 827
            :.::.|:..|:..|..|.:.....|..||:|||||:.|...:.||...||...::.:.|...::.
 Frog   895 FQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTESLLLRKPYGRNKP 959

  Fly   828 LISGWLFFRYMAIGFYVGAATVGAAAWWFVFSDEGPKLSYWQLTHHLSCLGGGDEFKGVD----C 888
            |||..:....:....|                         |||...:.|..|::...:|    .
 Frog   960 LISRTMMKNILGHAVY-------------------------QLTLIFTLLFVGEDLFNIDSGRNA 999

  Fly   889 KIFSDP-HAMTMALSVLVTIEMLNAMNSLSEN------QSLITMPPWCNLWLIGSMALSFTLHFV 946
            .:.|.| ...|:..:..|.:::.|.:|:...:      ..:...|.:|.: ::|:.|:.      
 Frog  1000 PLHSPPSEHYTIIFNTFVMMQLFNEINARKIHGERNVFDGIFRNPIFCTI-VLGTFAIQ------ 1057

  Fly   947 ILYVDVLSTVFQVTPLSAEEWITVMKFSIPVVLLDETLKFVARKIADGESPIYKMHGIVLMWAVF 1011
            |:.|......|..:||..::|                                       ||.:|
 Frog  1058 IVIVQFGGKPFSCSPLQLDQW---------------------------------------MWCIF 1083

  Fly  1012 FG 1013
            .|
 Frog  1084 LG 1085

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SERCANP_726381.1 P-type_ATPase_SERCA 5..989 CDD:319778 296/1146 (26%)
atp2b4XP_002934276.2 ATPase-IIB_Ca 12..1101 CDD:273668 300/1172 (26%)
ATP_Ca_trans_C 1140..1186 CDD:403580
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.