DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rec and MCM2

DIOPT Version :9

Sequence 1:NP_001262615.1 Gene:rec / 49241 FlyBaseID:FBgn0003227 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_175112.2 Gene:MCM2 / 841056 AraportID:AT1G44900 Length:936 Species:Arabidopsis thaliana


Alignment Length:905 Identity:195/905 - (21%)
Similarity:346/905 - (38%) Gaps:233/905 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 YRPYFYFRRNGRVIPAGGNRQPNQGEPGAPDAPSVPPATRQPRGWSRTAGKRGRNAHLDCSFL-R 88
            |||   .:|:...:|..||.....|.|  |.:|.|    .||                |.|.. :
plant   141 YRP---SKRSRTTVPPRGNGGDPDGNP--PSSPGV----SQP----------------DISMTDQ 180

  Fly    89 PENYAAPED-------------GLQVQSIAVDNPR-----AYSGWRLYFLREKYEEGNELATRIM 135
            .::|...:|             |...:.:..|..|     .:..:.|.:::.|.|.|:....|::
plant   181 TDDYQDEDDNDDEAEFEMYRIQGTLREWVMRDEVRRFIAKKFKDFLLTYVKPKNENGDIEYVRLI 245

  Fly   136 ---------AVEAYYQRNPHTFDFVMIRDRGFFPLCAAGIKSDAQLKEVWPSLSEDIREHPLRTL 191
                     ::|..|:...|                            |.|:::..:.:.|...|
plant   246 NEMVSANKCSLEIDYKEFIH----------------------------VHPNIAIWLADAPQPVL 282

  Fly   192 GTLSLAMHTVVVNHQLDCNDSTTAMVSTPEQYVLPTPRVRKIYARPDDFVPVESIEGISHSRVDT 256
            ..:......|:.:...:..:..|                 |||.|..:....:.|..|....::|
plant   283 EVMEEVSEKVIFDLHPNYKNIHT-----------------KIYVRVTNLPVNDQIRNIRQIHLNT 330

  Fly   257 LFSIRGFVSNVGEPSYSLTWQAFRCSRCQMEIAMRQRGTFQPRPY------QCKRSECVARDEFV 315
            :..|.|.|:........|....:.|::|...:     |.|....|      .|  |||.::    
plant   331 MIRIGGVVTRRSGVFPQLQQVKYDCNKCGAVL-----GPFFQNSYSEVKVGSC--SECQSK---- 384

  Fly   316 PLRSSPYTRLSIRQIIRVEESSLNLVHDFET----SMPAEMDVELRHDLVDAVRVGQEVVVTGIL 376
                .|:| :::.|.|......|.:.....|    .:|...:|.|.:||:|..|.|:|:.||||.
plant   385 ----GPFT-VNVEQTIYRNYQKLTIQESPGTVPAGRLPRHKEVILLNDLIDCARPGEEIEVTGIY 444

  Fly   377 KLQELGDDTTTGDTS-NQMQPYLKAVSIRDASSIKR--------EFSERDLEAIVMINAEPNSFK 432
                    |...|.| |....:....::.:|:.:.:        :.::.|...|..::.:|...:
plant   445 --------TNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKTQIEELSKDPRIVE 501

  Fly   433 LLVQSIAPEVYGHELPKAACLLSLLGGKGAETEA-------INVLLVGDPGIGKTKILQSCAQIA 490
            .:::||||.:||||..|.|..|::.||:....:.       |||||:||||..|::.|:...:..
plant   502 RIIKSIAPSIYGHEDIKTALALAMFGGQEKNIKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTG 566

  Fly   491 ERGAHVSGKRGAQSAQQLGVTFAGRNKRV-----LQAGSLMMASGGGHCTLDDVDKLASKQAVLL 550
            :|..:.:||    .|..:|:|.|.....|     |:.|:|::|. .|.|.:|:.||:..:..|.:
plant   567 QRAVYTTGK----GASAVGLTAAVHKDPVTREWTLEGGALVLAD-RGICLIDEFDKMNDQDRVSI 626

  Fly   551 -QCLQSEEVNLPLAGAFASFPAQPSVIACANPQRGQYDEGRYLLQNINISPSLLREFHLVYILLD 614
             :.::.:.:::..||...|..|:.||||.|||..|:||..:...||:.::..:|..|.::.::.|
plant   627 HEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKSFAQNVELTDPILSRFDILCVVKD 691

  Fly   615 KPSERDMSLTAHVRALHAGARKRARIAARYALKPKMSDSMCEVSLN-----VPAAGKDDDTIKTE 674
                                          .:.|...:.:.|..:|     .|..||.:|:    
plant   692 ------------------------------VVDPVTDEMLAEFVVNSHFKSQPKGGKMEDS---- 722

  Fly   675 DDNDSIMQQDYDLDKRLEVLPEEGDLDLLPPILIKKFLSYARQELNPVLNEDASNAVLRYFLELK 739
            |..|.|.......|.  ||||:.         |:||:|:|::..:.|.|.|..:..:...:..|:
plant   723 DPEDGIQGSSGSTDP--EVLPQN---------LLKKYLTYSKLYVFPKLGELDAKKLETVYANLR 776

  Fly   740 GSCNLDEDVSSQIGAGQLLAIIHLSQARARLDLSHVVSPQHVRDVIALLTESI-------TQTSL 797
            ......:.||  |....|.::|.:|:|.||:.|...|:.:.|...|.:|.:|.       .|.:|
plant   777 RESMNGQGVS--IATRHLESMIRMSEAHARMHLRQYVTEEDVNMAIRVLLDSFISTQKFGVQRTL 839

  Fly   798 KEGSSRQGTRGGGGAGGGAGKSAQLRNFLELTKRRSAALGRRIFEFDELKEIGTRAGILT 857
            :|...|..|              ..::|..|.......|.:...:|:|:.. |:.:|:.|
plant   840 RESFKRYIT--------------YKKDFNSLLLVLLKELVKNALKFEEIIS-GSNSGLPT 884

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
recNP_001262615.1 RNR_PFL <117..200 CDD:299130 12/91 (13%)
MCM 243..792 CDD:214631 142/585 (24%)
P-loop_NTPase 468..606 CDD:304359 45/143 (31%)
MCM2NP_175112.2 MCM2_N 67..>138 CDD:372227
MCM_N 222..313 CDD:379644 18/135 (13%)
MCM 320..828 CDD:214631 143/583 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D266497at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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