DRSC/TRiP Functional Genomics Resources

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Protein Alignment rec and mcm8

DIOPT Version :9

Sequence 1:NP_001262615.1 Gene:rec / 49241 FlyBaseID:FBgn0003227 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_001072344.1 Gene:mcm8 / 779797 XenbaseID:XB-GENE-961372 Length:843 Species:Xenopus tropicalis


Alignment Length:936 Identity:262/936 - (27%)
Similarity:421/936 - (44%) Gaps:174/936 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RGGAPSRFVRGRGRGGGAYRPYFYFRRNGRVIPAGGNR-QP--NQGEPGAPDAPSVPPATRQPRG 68
            |||...      ||||..|              |||.| :|  .:|:.|:               
 Frog     6 RGGWSG------GRGGNPY--------------AGGWRGRPWRGRGQGGS--------------- 35

  Fly    69 WSRTAGKRGRNAHLDCSFLRPENYAAPEDGLQVQSIAVDNPRAYSGWRLYFLREKYEEGNELATR 133
            |||.:|:            .|..::......|:....:|....|.||:||| .|.|.:.:....:
 Frog    36 WSRNSGR------------DPVCFSTAPPKPQLTQTTLDKYIPYKGWKLYF-SEAYSDSSPFLEK 87

  Fly   134 IMAVEAYYQRNPHTFDFVMIRDRGFFPLCAAGIKSDAQLKEVWPSLSEDIREHPLRTLGTLSLAM 198
            :.|.|.::.:....:|...|..:|...:....:..|..|....| :|.:::|.|.:.|..:.||:
 Frog    88 VRAFEKFFTKQIELYDKDEIERKGSILVDYKDLLQDEDLSASIP-MSSELKEMPEKILECMGLAI 151

  Fly   199 HTVVVNHQLDCNDSTTAMVSTPEQYVL-----PTPRVRKIYARPDDFVPVESIEGISHSRVDTLF 258
            |.|:.      .|.........||..|     |...|..|:||..::.|:..::.:..|......
 Frog   152 HQVLT------KDLERHAAELQEQEGLRTEEAPIVNVPFIHARVFNYDPLTPLKNLRASLYGKYV 210

  Fly   259 SIRGFVSNVGEPSYSLTWQAFRCSRCQMEIAMRQRGTFQPRPY---------QCKRSECVARDEF 314
            ::||.|..|..........||.|:.|         |..|..|:         :|...||..| .|
 Frog   211 ALRGTVVRVSNIKPLCVKMAFSCNMC---------GDIQSFPFPDGKYAVPTKCPVPECRGR-SF 265

  Fly   315 VPLRSSPYTRLSIRQIIRVEESSLNLVHDFETS---MPAEMDVELRHDLVDAVRVGQEVVVTGIL 376
            ...||||.|.....|.|:|:|    |:.|.:..   :|..::.||..||||:...|..|.||||:
 Frog   266 TANRSSPLTVTVDWQTIKVQE----LMSDDQREAGRIPRTVECELIQDLVDSCVPGDMVTVTGIV 326

  Fly   377 KLQELGDDTTTGDTSNQMQP-----YLKAVSIRDASSIK-------------REFSERDLEAIVM 423
            |:    .:|..|...|:...     |::|.|:.::...|             .:||.:||.||..
 Frog   327 KV----SNTRDGGFKNKNNKCMFLLYIEANSVSNSKGHKIKSTDDSESHGASMDFSLKDLYAIQE 387

  Fly   424 INAEPNSFKLLVQSIAPEVYGHELPKAACLLSLLGGKGAETEAIN---------VLLVGDPGIGK 479
            |.|:.|.|:|:|.|:.|.:|||||.||...|:|.||.....:..|         :|:|||||:||
 Frog   388 IQAQENLFQLIVNSLCPTIYGHELVKAGLSLALFGGCQKYADDKNRIPIRGDPHILVVGDPGLGK 452

  Fly   480 TKILQSCAQIAERGAHVSGKRGAQSAQQLGVTFAGRNKRV----LQAGSLMMASGGGHCTLDDVD 540
            :::||:...:|.||.:|.|.....|.  |.||.: |:...    |:||:|::.. .|.|.:|:.|
 Frog   453 SQMLQAVCNVAPRGVYVCGNTTTTSG--LTVTLS-RDSATGDFGLEAGALILGD-QGICGIDEFD 513

  Fly   541 KLASKQAVLLQCLQSEEVNLPLAGAFASFPAQPSVIACANPQRGQYDEGRYLLQNINISPSLLRE 605
            |:.::...||:.::.:.::|..||...|.||:.|:||.|||..|.|::|:.:.:|:.:..:||..
 Frog   514 KMGNQHQALLEAMEQQSISLAKAGIVCSLPARTSIIAAANPVGGHYNKGKTVSENLKMGSALLSR 578

  Fly   606 FHLVYILLDKPSE-RDMSLTAHVRALHAGARKRARIAARYALKPKMSDSMCEVSLNVPAAGKDDD 669
            |.||:||||.|:| .|..|:.||.|:.|||::                 |....|..|.      
 Frog   579 FDLVFILLDTPNEDHDHLLSEHVMAMRAGAKE-----------------MQSADLTCPT------ 620

  Fly   670 TIKTEDDNDSIMQQ--DYDLDKRLEVLPEEGDLDLLPPILIKKFLSYARQELNPVLNEDASNAVL 732
               |::.|.|::::  :..|.:||::.|.| ..|.:|..|::|::.||||.::|.|:.||:..:.
 Frog   621 ---TQNSNTSVLEEPSERPLGERLKLRPGE-HFDPIPHQLLRKYVGYARQYVHPTLSPDAAQVLQ 681

  Fly   733 RYFLEL-KGSCNLDEDVSSQIGAGQLLAIIHLSQARARLDLSHVVSPQHVRDVIALLTESITQTS 796
            .::||| |.:..:|   |:.|...||.::|.|::|||||:|....:.....:|:.::..|:..|.
 Frog   682 DFYLELRKQNQGID---STPITTRQLESLIRLTEARARLELREKATKDDAEEVVQIMKYSLLGTF 743

  Fly   797 LKEGSSRQGTRGGGGAGGGAGKSAQLRNFLELTKRRSAALGRRIFEFDELKEIGTRAGI--LTGF 859
            ..|.......|...|:  |....::.:.|:....|.:......:|||.:|::|.....|  |..|
 Frog   744 SDEFGKLDFHRSQHGS--GMSNRSKAKKFISALNRIAEQTYNNLFEFQQLRQIAKELQIQLLGKF 806

  Fly   860 SQLVEMA----NL----GGYLLMKGA 877
            :...:||    ||    |..|..||:
 Frog   807 NHSDKMATEIPNLRAAPGNQLRPKGS 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
recNP_001262615.1 RNR_PFL <117..200 CDD:299130 19/82 (23%)
MCM 243..792 CDD:214631 182/595 (31%)
P-loop_NTPase 468..606 CDD:304359 50/150 (33%)
mcm8NP_001072344.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52 20/92 (22%)
Mcm2 93..769 CDD:224162 212/736 (29%)
MCM8 397..738 CDD:350665 123/374 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I12056
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55021
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 1 1.000 - - FOG0001226
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11630
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5321
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.030

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