DRSC/TRiP Functional Genomics Resources

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Protein Alignment rec and mcm3

DIOPT Version :10

Sequence 1:NP_732072.1 Gene:rec / 49241 FlyBaseID:FBgn0003227 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_001039231.1 Gene:mcm3 / 734092 XenbaseID:XB-GENE-5857845 Length:809 Species:Xenopus tropicalis


Alignment Length:615 Identity:153/615 - (24%)
Similarity:270/615 - (43%) Gaps:80/615 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 DFVPVESIEGISHSRVDTLF-SIRGFVSNVGEPSYSLTWQAFRCSRCQMEIAMRQRGTFQPR--- 299
            ||  |.||:|....:.:..: .:.|...|......:||.:...|..| :|..:.:....:|:   
 Frog    84 DF--VASIDGTYAKQYEEFYIGLEGSFGNKHVTPRTLTSRCLSCIVC-VEGIVTKCSLVRPKVVR 145

  Fly   300 -PYQCKRSECVARDEFVPLRSSPYTRLSIRQIIRVEESS-------LNLVHDFET---------- 346
             .:.|..::.....::..|.|......|.....:.||::       |::..|.:|          
 Frog   146 SVHYCPATKKTIERKYTDLTSLEAFPSSAVYPTKDEENNPLETEYGLSIYKDHQTITIQEMPEKA 210

  Fly   347 ---SMPAEMDVELRHDLVDAVRVGQEVVVTGILKLQELGDDTTTGDTSNQMQPYLKAVS-IRDAS 407
               .:|..:|:.|..||||.|:.|..|.|.|..:..   .....|.||...:..|.|.: |:.:.
 Frog   211 PAGQLPRSVDIILDDDLVDKVKPGDRVQVIGTYRCL---PSKQNGYTSASFRTILIACNVIQMSK 272

  Fly   408 SIKREFSERDLEAIVMINAEPNS--FKLLVQSIAPEVYGHELPKAACLLSLLGG------KGAET 464
            .:...||..||..|...:...:.  |:.|.:|:||.::||...|.|.|..||||      .|...
 Frog   273 EVTPVFSADDLAKIKKFSKSHSKDIFEQLSRSLAPSIHGHLYIKKAILCMLLGGVEKVLDNGTRI 337

  Fly   465 EA-INVLLVGDPGIGKTKILQSCAQIAERGAHVSGKRGAQSAQQLGVTFA-----GRNKRVLQAG 523
            .. |||||:|||.:.|:::|:.....|.|....:| ||:..   :|:|.|     ...:|.|:||
 Frog   338 RGDINVLLIGDPSVAKSQLLRYVLCTAPRAIPTTG-RGSSG---VGLTAAVTTDQETGERRLEAG 398

  Fly   524 SLMMASGGGHCTLDDVDKLAS-KQAVLLQCLQSEEVNLPLAGAFASFPAQPSVIACANPQRGQYD 587
            ::::|..|..| :|:.||::. .:..:.:.::...|.:..||..|...|:.||:|.|||..|:||
 Frog   399 AMVLADRGVVC-IDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYD 462

  Fly   588 EGRYLLQNINISPSLLREFHLVYILLDK-PSERDMSLTAHVRALHAGARKRARIAARYALKPKMS 651
            :.:..:.||.:..|||..|.|::|:||: ..|:|..::.||..:|           ||....:..
 Frog   463 QYKTPMDNIGLQDSLLSRFDLLFIMLDQMDPEQDREISDHVLRMH-----------RYRAAGEQD 516

  Fly   652 DSMCEVSLNVPAAGKDDDTIKTEDDNDSIMQQDYD-----LDKRLEVLPEEGDLDLLPPILIKKF 711
            .....:...|.....:|..:.:|:..:..:.:.:|     :.||.|        .:|....::|:
 Frog   517 GDAMPLGSAVDILATNDPNVTSEEQQELQVYEKHDSLLHGVKKRKE--------KILSVEFMRKY 573

  Fly   712 LSYARQELNPVLNEDASNAVLRYFLELKGSCNLDEDV--SSQIGAGQLLAIIHLSQARARLDLSH 774
            :..|: ...|||.::|::.:...:..|:....|..||  :|.:.|..|..:|.||.|.|::.:|.
 Frog   574 VHVAK-IFKPVLTQEAASFIAEEYSRLRNQDQLSTDVARTSPVTARTLETLIRLSTAHAKVRMSK 637

  Fly   775 VVSPQHVRDVIALLTESITQTSLKEGSSRQ 804
            .|..|.....|.|:..:..:..|::...|:
 Frog   638 TVQLQDAEAAIELVQYAYFKKVLEKEKKRR 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
recNP_732072.1 Mcm2 177..799 CDD:440854 152/608 (25%)
MCM8 433..791 CDD:350665 104/378 (28%)
MCM8_WHD 819..883 CDD:439328
mcm3NP_001039231.1 MCM_N 18..106 CDD:464206 6/23 (26%)
MCM 111..656 CDD:214631 143/573 (25%)
Arginine finger 479..482 0/2 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 664..741 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.

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