DRSC/TRiP Functional Genomics Resources

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Protein Alignment rec and mcm9

DIOPT Version :9

Sequence 1:NP_001262615.1 Gene:rec / 49241 FlyBaseID:FBgn0003227 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_001333089.1 Gene:mcm9 / 555610 ZFINID:ZDB-GENE-041014-310 Length:1135 Species:Danio rerio


Alignment Length:612 Identity:132/612 - (21%)
Similarity:247/612 - (40%) Gaps:164/612 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 DFVPVESIEGISHSRVDTLFSIRGFVSNVGEPSYSLTWQAFRCSRCQ----MEIAMRQRGTFQPR 299
            |.:|  ....:.|....|...||..|:.|.|  |.   :.:.|::|:    ::.:..|..||.| 
Zfish   118 DHIP--KARDVGHFLSVTGTVIRTSVTKVLE--YE---RDYMCNKCRHVFSVQASFEQFYTFTP- 174

  Fly   300 PYQCKRSE--------CVARDEFVPLRSSPYTRLSIRQIIRVEESSLNLVHDFETSMPAEMDVEL 356
            |..|...|        |::..:..|.....|..:.|::  :|::.|:.       |:|..|.:.|
Zfish   175 PTSCPSEEGCGSFKFTCLSGSDAPPAACKDYQEIKIQE--QVQKLSVG-------SIPRSMLIIL 230

  Fly   357 RHDLVDAVRVGQEVVVTGIL--KLQELGDDTTTGDTSNQMQPYLKA--VSIRDASS--------I 409
            ..||||:.:.|.::.|.|::  :.:.:..|...     .::..|||  :.:.:..|        |
Zfish   231 EDDLVDSCKSGDDITVYGVVCQRWKPMFQDCRC-----DVEIVLKANYIEVNNEQSTTALVLEDI 290

  Fly   410 KREFSE----RDLEAIVMINAEPNSFKLLVQSIAPEVYGHELPKAACLLSLLGG------KGAET 464
            ::||.|    ...:.|...|.       ::.|:.|:|:|..:.|.|..:.|.||      .|.:.
Zfish   291 QKEFEEFWDSHKHDPIAGRNE-------ILMSLCPQVFGMYVVKLAVAMVLAGGVQRIDASGTKV 348

  Fly   465 EA-INVLLVGDPGIGKTKILQSCAQIAERGAHVSGKRGAQSAQQLGVTFAGRNKRV--------L 520
            .. .::|||||||.||::.|:..|:|..|....:|         :|.|.||.....        |
Zfish   349 RGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTAG---------IGSTNAGLTVAAVKDSGEWHL 404

  Fly   521 QAGSLMMASGGGHCTLDDVDKLASKQAVLL-QCLQSEEVNLPLAGAFASFPAQPSVIACANPQRG 584
            :||:|:: |.||.|.:|:.:.:.......: :.::.:.:::..||.......:.:::|..|| :|
Zfish   405 EAGALVL-SDGGLCCIDEFNSIKEHDRTSIHEAMEQQTISVAKAGMVCKLDTRTTILAATNP-KG 467

  Fly   585 QYDEGRYLLQNINISPSLLREFHLVYILLD-KPSERDMSLTAHVRALHAGARKRARIAARYALKP 648
            |||....:..|:.::..||..|.||.:||| |..:.|                  :|.:.:.|:.
Zfish   468 QYDPNVSVSVNVALASPLLSRFDLVLVLLDTKNPDWD------------------KIISSFILQN 514

  Fly   649 K--MSDSMCEVSLNVPAAGKDDDTIKTEDDNDSIMQQDYDLDKRLEVLPEEGDLDLLPPILIKKF 711
            |  .|:|:|..|:                                                 :|.
Zfish   515 KGAPSESLCLWSM-------------------------------------------------EKM 530

  Fly   712 LSY--ARQELNPVLNEDASNAVLRYFLELKGSCNLDEDVSSQIGAGQLLAIIHLSQARARLDLSH 774
            .:|  ..:.|.|.:..:|:..:.||:...:.|   |...:::.....|.::..|::|.|||....
Zfish   531 RAYFCLIKTLKPRITPEANTILSRYYQLQRQS---DSRNAARTTIRMLESLSRLAEAHARLMFRE 592

  Fly   775 VVSPQHVRDVIALLTESITQTSLKEGS 801
            .|:   |.|.:.::  |:.:.|::.|:
Zfish   593 TVT---VEDAVVVV--SVMECSMQGGA 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
recNP_001262615.1 RNR_PFL <117..200 CDD:299130
MCM 243..792 CDD:214631 127/597 (21%)
P-loop_NTPase 468..606 CDD:304359 39/146 (27%)
mcm9NP_001333089.1 Mcm2 23..588 CDD:224162 124/579 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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