DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rec and mcm5

DIOPT Version :10

Sequence 1:NP_732072.1 Gene:rec / 49241 FlyBaseID:FBgn0003227 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_001017327.2 Gene:mcm5 / 550081 XenbaseID:XB-GENE-985665 Length:735 Species:Xenopus tropicalis


Alignment Length:792 Identity:183/792 - (23%)
Similarity:322/792 - (40%) Gaps:190/792 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 FLREKYEEGNELATRIMAVEAYYQRNPHTFDFVMIRDRGFFPLCAAGIKSDAQLKEVW------- 176
            |||: |..|.:             |...||.:   ||.         :|....|.|.|       
 Frog    39 FLRQ-YRVGTD-------------RTGFTFKY---RDE---------LKRHYNLGEYWIEVEMED 77

  Fly   177 -PSLSEDIREH----PLRTLGTLSLAMHTVVVNHQLDCNDSTTAMVSTPEQYVLPTPRVRKIYAR 236
             .|..||:.::    |...|..|..|...|.        |..|......|:.:.....:.:..|.
 Frog    78 LASFDEDLADYLYKQPTEHLQLLEEAAQEVA--------DEVTRPRPAGEETIQEIQVMLRSDAN 134

  Fly   237 PDDFVPVESIEGISHSRVDTLFSIRGFVSNVGEPSYSLTWQAFRCSRCQM---EIAMRQ--RGTF 296
            |.:...::| |.:||     |..|.|.:..........|..:.:|..|:.   .||:|.  .|..
 Frog   135 PANIRSLKS-EQMSH-----LVKIPGIIIAATAVRAKATKISIQCRSCRNTIGNIAVRPGLEGYA 193

  Fly   297 QPR---PYQCKRSECVARDEFVPLRSSPYTRLSIR------QIIRVEESSLNLVHDFETSMPAEM 352
            .||   ..|..|.:|       ||  .||..:..:      |.::::||...:.|.   .:|..|
 Frog   194 MPRKCNTEQAGRPKC-------PL--DPYFIIPDKCKCVDFQTLKLQESPDAVPHG---ELPRHM 246

  Fly   353 DVELRHDLVDAVRVGQEVVVTGILKLQELGDDTTTGDTS---NQMQPYLKAVSIR-DASSIKRE- 412
            .:.....|.|.|..|..|.:.||..:::.|..:|.|...   .....|::.|.|: |.....|. 
 Frog   247 QLYCDRYLCDKVVPGNRVTIMGIYSIRKSGKTSTKGRDRVGVGIRSSYIRVVGIQVDTEGTGRSA 311

  Fly   413 ---FSERDLEAIVMINAEPNSFKLLVQSIAPEVYG-HELPKA-ACLLSLLGGK------GAETEA 466
               .:.::.|....::|:|:.::.:.:||||.:|| .::.|| |||  |.||.      |.....
 Frog   312 AGAITPQEEEEFRRLSAKPDIYETVAKSIAPSIYGSSDIKKAIACL--LFGGSRKRLPDGLTRRG 374

  Fly   467 -INVLLVGDPGIGKTKILQSCAQIAERGAHVSGKRGAQSAQQLGVTFA------GRNKRVLQAGS 524
             :|:|::||||..|:::|:...:.:..|.:.||| |:.:|   |:|.:      .|| .:::.|:
 Frog   375 DVNLLMLGDPGTAKSQLLKFVERCSPIGVYTSGK-GSSAA---GLTASVMRDPVSRN-FIMEGGA 434

  Fly   525 LMMASGGGHCTLDDVDKLASKQAVLL-QCLQSEEVNLPLAGAFASFPAQPSVIACANPQRGQYDE 588
            :::|.||..| :|:.||:.....|.: :.::.:.:::..||...:..::.||:|.||...|::|:
 Frog   435 MVLADGGVVC-IDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVYGRWDD 498

  Fly   589 --GRYLLQNINISPSLLREFHLVYILLDKPSE-RDMSLTAHVRALHAGARKRARIAARYALKPKM 650
              |.   :||:..|::|..|.:::|:.|:.:| |||:|..||..:|..||.:             
 Frog   499 TKGE---ENIDFMPTILSRFDMIFIVKDEHNEQRDMTLAKHVMNVHLSARTQ------------- 547

  Fly   651 SDSMCEVSLNVPAAGKDDDTIKTEDDNDSIMQQDYDLDKRLEVLPEEGDLDLLPPILIKKFLSYA 715
            |.|:                                          ||::||   ..:||:::|.
 Frog   548 SSSV------------------------------------------EGEIDL---NTLKKYIAYC 567

  Fly   716 RQELNPVLN-EDASNAVLRYFLELKGSCNLDEDV----SSQIGAGQLLAIIHLSQARARLDLSHV 775
            |.:..|.|: |.|.....||.|...|:.:.:.:.    |..|...||.||:.:|::..::.|...
 Frog   568 RAKCGPRLSAESAEKLKNRYILMRSGARDHERETEKRSSIPITVRQLEAIVRISESLGKMKLQPF 632

  Fly   776 VSPQHVRDVIALLTESITQTSLKEGSSRQGTRGGGGAGGGAGKSAQLRNFLELTKRRSAALGRRI 840
            .:...|.:.:.|...|....::....|       |..|....:..::.:.:|...:|..|:|.::
 Frog   633 ATETDVEEALRLFQVSTLDAAMSGSLS-------GVEGFTTQEDQEMLSRIEKQLKRRFAIGSQV 690

  Fly   841 FEF----DELKE 848
            .|.    |.||:
 Frog   691 SEHSIIQDFLKQ 702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
recNP_732072.1 Mcm2 177..799 CDD:440854 158/671 (24%)
MCM8 433..791 CDD:350665 97/381 (25%)
MCM8_WHD 819..883 CDD:439328 8/34 (24%)
mcm5NP_001017327.2 MCM_N 33..131 CDD:464206 25/125 (20%)
MCM 134..650 CDD:214631 146/602 (24%)
Arginine finger 513..516 0/2 (0%)

Return to query results.
Submit another query.