DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rec and mcm6

DIOPT Version :9

Sequence 1:NP_001262615.1 Gene:rec / 49241 FlyBaseID:FBgn0003227 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_001016221.1 Gene:mcm6 / 548975 XenbaseID:XB-GENE-5870537 Length:821 Species:Xenopus tropicalis


Alignment Length:875 Identity:193/875 - (22%)
Similarity:337/875 - (38%) Gaps:246/875 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 GKRGRNAHLDCS--FLRPENYAAPEDGLQVQSIAVDNPRAYSGWRLYFLREKYEEGNELATRIMA 136
            ||.|.|.::..:  .:|||     .:.|.|....::          |:       ..:|||.|. 
 Frog    40 GKDGSNLYVSAAEELVRPE-----RNTLVVNFTDIE----------YY-------NQQLATTIQ- 81

  Fly   137 VEAYYQRNPHTFDFVMIRDRGFFPLCAAGIKSDAQLKEVWPSLSEDIREHPLRTLGTLSLAMHTV 201
             |.||:..||              ||.| ::|.|                  |.:|.:       
 Frog    82 -EEYYRVYPH--------------LCRA-VRSFA------------------RQMGNI------- 105

  Fly   202 VVNHQLDCNDSTTAMVSTPEQYVLPTPRVRKIYARPDDFVPVESIEGISHSRVDTLFSIRGFVSN 266
                                      |..::.|....||...:.|..:|.:::.||..|.|.|..
 Frog   106 --------------------------PANKEFYVAFSDFPARQKIRELSSAKIGTLLRISGQVVR 144

  Fly   267 VGEPSYSLTWQAFRCSRCQMEIAMRQRGTFQPRPYQCKRSECVARDEFVPLRSSPYTRLSIRQII 331
            .......|....|.|..||..:...::.....:|..||...|..|..|.  ..:..:|....|.:
 Frog   145 THPVHPELVSGTFLCMDCQSVVKDVEQQFRYTQPTICKNPVCANRRRFT--LDTNKSRFVDFQKV 207

  Fly   332 RVEESSLNLVHDFETSMPAEMDVELRHDLVDAVRVGQEVVVTGILKL-------------QELGD 383
            |::|:...|...   ::|..:::.||.:.|:....|.....||.|.:             .|.|.
 Frog   208 RIQETQAELPRG---AIPRSVEIILRAEAVETAMAGDRCDFTGTLIVVPDISALAAGDARMETGA 269

  Fly   384 DTTTGD--TSNQMQPYLKAVSIRD------------------------------ASSIKREFSER 416
            ..|.|:  .|..:|. |||:.:||                              |.|||.:.:.:
 Frog   270 KVTGGEGFNSEGVQG-LKALGVRDLSYRLAFLACHVGATNPRFGGKDLREEDQTAESIKNQMTVQ 333

  Fly   417 DLEAIVMINAEPNSFKLLVQSIAPEVYGHELPKAACLLSLLGG------KGAETEA-INVLLVGD 474
            :.|.:..::.:.|.:..|..|:.|.::|::..|...||.|.||      :|..... |||.:|||
 Frog   334 EWEKVFEMSQDKNLYHNLCTSLFPTIHGNDEIKRGVLLMLFGGVPKTTMEGTSLRGDINVCIVGD 398

  Fly   475 PGIGKTKILQSCAQIAERGAHVSGKRGAQSAQQLGVTFA-----GRNKRVLQAGSLMMASGGGHC 534
            |...|::.|:...:.:.|..:.|||  |.||  .|:|.|     ..::.|::||:||:|. .|.|
 Frog   399 PSTSKSQFLKHVEEFSPRAVYTSGK--ASSA--AGLTAAVVKDEESHEFVIEAGALMLAD-NGVC 458

  Fly   535 TLDDVDKLASK-QAVLLQCLQSEEVNLPLAGAFASFPAQPSVIACANPQRGQYDEGRYLLQNINI 598
            .:|:.||:..| |..:.:.::.:.:::..||..|:..|:.|::|.|||..|:|:..:.|..|:|:
 Frog   459 CIDEFDKMDLKDQVAIHEAMEQQTISITKAGVKATLNARTSILAAANPVGGRYERSKSLKHNVNL 523

  Fly   599 SPSLLREFHLVYILLDKPSE-RDMSLTAHVRALHAGARKRARIAARYALKPKMSDSMCEVSLNVP 662
            |..::..|.|.:||:|:.:| .|.::...:..|||                              
 Frog   524 SAPIMSRFDLFFILVDECNEVTDYAIARRIVDLHA------------------------------ 558

  Fly   663 AAGKDDDTIKTEDDNDSIMQQDYDLDKRLEVLPEEGDLDLLPPILIKKFLSYARQELNPVLNEDA 727
                         .|:..:::.|.::.                  |:::|.:||| ..|.:.::|
 Frog   559 -------------RNEESIERVYSIED------------------IQRYLLFARQ-FQPKITKEA 591

  Fly   728 SNAVLRYFLELKGSCNLDEDVSS-QIGAGQLLAIIHLSQARARLDLSHVVSPQHVRDVIALLTES 791
            ...::..:..|:.........|| :|...||.::|.||::.||:..|..|.|:||::...||::|
 Frog   592 EEFIVEQYRRLRQRDGSGVAKSSWRITVRQLESLIRLSESMARMHCSDEVQPKHVKEAFRLLSKS 656

  Fly   792 ITQTSLKEGSSRQGTRGGGGAGGGAGKSAQLRNFLELTKRRSAALGRRIFEFDELKEI----GTR 852
            |.:....:.|..||              ...:|..|.....:...|....|.::.:.|    .|.
 Frog   657 IIRVDTPDVSFDQG--------------EDEKNVEEEVNNANLNNGEEAMETNQDEPINDKPSTN 707

  Fly   853 AGILTGFSQLVEMANLGGYLLMKGANMYEV 882
            ||:...|::..:::||   |::....|.||
 Frog   708 AGLKMSFAEYKQISNL---LVLHMQKMEEV 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
recNP_001262615.1 RNR_PFL <117..200 CDD:299130 17/82 (21%)
MCM 243..792 CDD:214631 143/608 (24%)
P-loop_NTPase 468..606 CDD:304359 46/143 (32%)
mcm6NP_001016221.1 MCM_N 31..117 CDD:379644 28/166 (17%)
MCM 123..658 CDD:214631 144/607 (24%)
Arginine finger 529..532 0/2 (0%)
MCM6_C 710..819 CDD:375690 7/28 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 1 1.000 - - FOG0001226
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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