DRSC/TRiP Functional Genomics Resources

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Protein Alignment rec and Mcm3

DIOPT Version :9

Sequence 1:NP_001262615.1 Gene:rec / 49241 FlyBaseID:FBgn0003227 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_001178734.2 Gene:Mcm3 / 316273 RGDID:1305168 Length:813 Species:Rattus norvegicus


Alignment Length:683 Identity:152/683 - (22%)
Similarity:280/683 - (40%) Gaps:155/683 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 DFVPVESIEGISHSRVDTLFS--------------------------------------IRGFVS 265
            ||:..|..:||..::|..|.|                                      ::.||:
  Rat    21 DFLDDEEDQGIYQNKVRELISDNQYRLIVNVNDLRRKNEKRANRLLNNAFEELVAFQRALKDFVA 85

  Fly   266 NVGEPSYSLTWQAFRCSRCQMEIAMRQRGTF-----QPRPYQCKRSECVARDEFVPLRSS----- 320
            :: :.:|:..::         |..:...|:|     .||........||...|.:..:.|     
  Rat    86 SI-DATYAKQYE---------EFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPK 140

  Fly   321 --------PYTRLSIRQ-------IIRVEESS-----------------LNLVHDFET------- 346
                    |.|:.:|.:       ::....||                 |::..|.:|       
  Rat   141 VVRSVHYCPATKKTIERRYSDLTTLVAFPSSSVYPTKDEENNPLETEYGLSVYKDHQTITIQEMP 205

  Fly   347 ------SMPAEMDVELRHDLVDAVRVGQEVVVTGILKLQELGDDTTTGDTSNQMQPYLKAVSIRD 405
                  .:|..:||.|..||||.|:.|..:.|.|..:..   .....|.||...:..|.|.:::.
  Rat   206 EKAPAGQLPRSVDVILDDDLVDKVKPGDRIQVVGTYRCL---PGKKGGYTSGTFRTVLIACNVKQ 267

  Fly   406 AS-SIKREFSERDLEAIVMIN--AEPNSFKLLVQSIAPEVYGHELPKAACLLSLLGGKGAETE-- 465
            .| .|:..||..|:..|...:  ...:.|:.|.:|:||.::||:..|.|.|..||||...|.|  
  Rat   268 MSKDIQPAFSADDIAKIKKFSKTRSKDVFEQLARSLAPSIHGHDYVKKAILCLLLGGVERELENG 332

  Fly   466 -----AINVLLVGDPGIGKTKILQSCAQIAERGAHVSGKRGAQSAQQLGVTFA-----GRNKRVL 520
                 .||:||:|||.:.|:::|:.....|.|....:| ||:..   :|:|.|     ...:|.|
  Rat   333 SHIRGDINILLIGDPSVAKSQLLRYVLCTAPRAIPTTG-RGSSG---VGLTAAVTTDQETGERRL 393

  Fly   521 QAGSLMMASGGGHCTLDDVDKLAS-KQAVLLQCLQSEEVNLPLAGAFASFPAQPSVIACANPQRG 584
            :||::::|..|..| :|:.||::. .:..:.:.::...|.:..||..|...|:.||:|.|||..|
  Rat   394 EAGAMVLADRGVVC-IDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYG 457

  Fly   585 QYDEGRYLLQNINISPSLLREFHLVYILLDK-PSERDMSLTAHVRALHAGARKRARIAARYALKP 648
            :||:.:..::||.:..|||..|.|::|:||: ..|:|..::.||..:|           :|....
  Rat   458 RYDQYKTPMENIGLQDSLLSRFDLLFIMLDQMDPEQDREISDHVLRMH-----------QYRAPG 511

  Fly   649 KMSDSMCEVSLNVPAAGKDDDTIKTEDDNDSIMQQDYD-----LDKRLEVLPEEGDLDLLPPILI 708
            :.......:..:|.....||.....:|..|:.:.:.:|     ..|:.|        .::....:
  Rat   512 EQDGDALPLGSSVDILATDDPDFTQDDQQDTRIYEKHDNLLHGSKKKRE--------KMVSAAFM 568

  Fly   709 KKFLSYARQELNPVLNEDASNAVLRYFLELKGSCNLDEDV--SSQIGAGQLLAIIHLSQARARLD 771
            ||::..|: .:.|.|.::::..:...:..|:...::..|.  :|.:.|..|..:|.|:.|.|:..
  Rat   569 KKYIHVAK-IIKPTLTQESAAYIAEEYSRLRSQDSMSSDTARTSPVTARTLETLIRLATAHAKAR 632

  Fly   772 LSHVVSPQHVRDVIALLTESITQTSLKEGSSRQ 804
            :|..|..|...:.:.|:..:..:..|::...|:
  Rat   633 MSKTVDLQDAEEAVELVQYAYFKKVLEKEKKRK 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
recNP_001262615.1 RNR_PFL <117..200 CDD:299130
MCM 243..792 CDD:214631 148/665 (22%)
P-loop_NTPase 468..606 CDD:304359 45/143 (31%)
Mcm3NP_001178734.2 MCM_N 17..129 CDD:291233 18/117 (15%)
MCM 109..654 CDD:214631 136/572 (24%)
P-loop_NTPase 340..479 CDD:304359 45/143 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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