DRSC/TRiP Functional Genomics Resources

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Protein Alignment rec and Mcm8

DIOPT Version :9

Sequence 1:NP_001262615.1 Gene:rec / 49241 FlyBaseID:FBgn0003227 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_001099984.1 Gene:Mcm8 / 296178 RGDID:1305218 Length:830 Species:Rattus norvegicus


Alignment Length:914 Identity:266/914 - (29%)
Similarity:430/914 - (47%) Gaps:139/914 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RGRGRGGGAYRPYFYFRRNGRVIPAGGNRQPNQGEPGAPDAPSVPPATRQPRGWSRTAGKRGRNA 80
            ||||.|.|.::.:    :.||   .|||               .....|.....|:.||      
  Rat     6 RGRGFGRGRFQNW----KRGR---GGGN---------------FSGRWRDRTDLSKAAG------ 42

  Fly    81 HLDCSFLRPENYAAPEDGLQ--VQSIAVDNPRAYSGWRLYFLREKYEEGNELATRIMAVEAYYQR 143
                      |:|: |...|  :|...:|....|.||:||| .|.|...:.|..:|.|.|.::.|
  Rat    43 ----------NHAS-EQASQPLLQQSTLDQFIPYKGWKLYF-SEVYSNNSPLTEKIQAFEKFFTR 95

  Fly   144 NPHTFDFVMIRDRGFFPLCAAGIKSDAQLKEVWPSLSEDIREHPLRTLGTLSLAMHTVVV----N 204
            :...:|...|..:|...:....:..|.::..:.|.:...:|:.|.:||..:.||:|.|:.    .
  Rat    96 HIDLYDKDEIERKGSILVDFKELTKDNEITNLIPDIENALRDAPEKTLACMGLAIHQVLTKDLER 160

  Fly   205 HQLD-------CNDSTTAMVSTPEQYVLPTPRVRKIYARPDDFVPVESIEGISHSRVDTLFSIRG 262
            |..:       ||...| ||:.|.           ||||..::.|:..::.|..:......||||
  Rat   161 HAAELQAQEGLCNGGGT-MVNVPH-----------IYARVYNYEPLTHLKNIRATCYGKYISIRG 213

  Fly   263 FVSNVGEPSYSLTWQAFRCSRC-QMEIAMRQRGTFQPRPYQCKRSECVARDEFVPLRSSPYTRLS 326
            .|..|.......|..||:|:.| :::......|.:. .|.:|....|..| .|.||||||.|...
  Rat   214 TVVRVSNIKPLCTKMAFQCAACGEIQSFPLPDGKYN-LPTKCPVPACRGR-SFTPLRSSPLTVTM 276

  Fly   327 IRQIIRVEESSLNLVHDFETS---MPAEMDVELRHDLVDAVRVGQEVVVTGILKLQELGDDTTTG 388
            ..|:|:::|    |:.|.:..   :|..::.||.|||||:...|..|.||||:|:....:.:.:.
  Rat   277 DWQLIKIQE----LMSDAQREAGRIPRTIECELVHDLVDSCVPGDTVTVTGIVKVSNSEEGSRSK 337

  Fly   389 DTSNQMQPYLKAVSIRDASSIK-------------REFSERDLEAIVMINAEPNSFKLLVQSIAP 440
            :.......|::|.|:.::...|             .|||.:||.||..|.||.|..||:|.|:.|
  Rat   338 NDKCMFLLYIEANSVSNSKGQKAQTAEDGCKHGTLMEFSLKDLYAIQEIQAEENLLKLIVNSLCP 402

  Fly   441 EVYGHELPKAACLLSLLGGKGAETEAIN---------VLLVGDPGIGKTKILQSCAQIAERGAHV 496
            .::||||.||..:|:|.||.....:..|         ||:|||||:||:::||:...:|.||.:|
  Rat   403 VIFGHELVKAGLMLALFGGSQKYADDKNRIPIRGDPHVLIVGDPGLGKSQMLQAACNVAPRGVYV 467

  Fly   497 SGKRGAQSAQQLGVTFAGRNKR---VLQAGSLMMASGGGHCTLDDVDKLASKQAVLLQCLQSEEV 558
            .|.....|.  |.||.:..:..   .|:||:|::.. .|.|.:|:.||:.::...||:.::.:.:
  Rat   468 CGNTATSSG--LTVTLSKDSSSGDFALEAGALVLGD-QGICGIDEFDKMGNQHQALLEAMEQQSI 529

  Fly   559 NLPLAGAFASFPAQPSVIACANPQRGQYDEGRYLLQNINISPSLLREFHLVYILLDKPSER-DMS 622
            :|..||...|.||:.|:||.|||..|.|::.|.:.:|:.:..:||..|.||:||||.|:|: |..
  Rat   530 SLAKAGVVCSLPARTSIIAAANPVGGHYNKARTVSENLKMGSALLSRFDLVFILLDTPNEQHDHL 594

  Fly   623 LTAHVRALHAGARKRARIAARYALKPKMSDSMCEVSLNVPAAGKDDDTIKTEDDNDSIMQ--QDY 685
            |:.||.|:.||.::..              |...||           .:.::|.|.|:::  .:.
  Rat   595 LSEHVIAIRAGKQRAV--------------SSATVS-----------RVLSQDSNTSVLEVVSEK 634

  Fly   686 DLDKRLEVLPEEGDLDLLPPILIKKFLSYARQELNPVLNEDASNAVLRYFLELKGSCNLDEDV-S 749
            .|.:||:|.|.| ..|.:|..|::|::.||||.::|.|:.:|:.|:..::|||:   ...:.| |
  Rat   635 PLSERLKVAPGE-KTDPIPHQLLRKYIGYARQYVHPRLSTEAAQALQDFYLELR---KQSQRVGS 695

  Fly   750 SQIGAGQLLAIIHLSQARARLDLSHVVSPQHVRDVIALLTESITQTSLKEGSSRQGTRGGGGAGG 814
            |.|...||.::|.|::|||||:|....:.:...|:|.::..|:..|...|..:....|...|:|.
  Rat   696 SPITTRQLESLIRLTEARARLELREEATKEDAEDIIEIMKHSMLGTYSDEFGNLDFERSQHGSGM 760

  Fly   815 GAGKSAQLRNFLELTKRRSAALGRRIFEFDELKEIGTRAGI-LTGFSQLVEMANLGGYLLMKGAN 878
            ....:|  :.|:......:......||:|.:|::|.....| :..|...:...|..||||.||..
  Rat   761 SNRSTA--KRFISALNSIAERTYNNIFQFHQLRQIAKELNIQVADFENFIGSLNDQGYLLKKGPK 823

  Fly   879 MYEV 882
            :|::
  Rat   824 IYQL 827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
recNP_001262615.1 RNR_PFL <117..200 CDD:299130 21/82 (26%)
MCM 243..792 CDD:214631 184/581 (32%)
P-loop_NTPase 468..606 CDD:304359 50/149 (34%)
Mcm8NP_001099984.1 MCM_N 88..213 CDD:291233 31/136 (23%)
Mcm2 129..827 CDD:224162 228/749 (30%)
AAA 425..583 CDD:99707 53/160 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341377
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 319 1.000 Inparanoid score I2453
OMA 1 1.010 - - QHG55021
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 1 1.000 - - FOG0001226
OrthoInspector 1 1.000 - - oto96009
orthoMCL 1 0.900 - - OOG6_104142
Panther 1 1.100 - - LDO PTHR11630
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5321
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.770

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