DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rec and mcm-3

DIOPT Version :9

Sequence 1:NP_001262615.1 Gene:rec / 49241 FlyBaseID:FBgn0003227 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_506706.1 Gene:mcm-3 / 180010 WormBaseID:WBGene00003155 Length:812 Species:Caenorhabditis elegans


Alignment Length:478 Identity:123/478 - (25%)
Similarity:214/478 - (44%) Gaps:86/478 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 MPAEMDVELRHDLVDAVRVGQEVVVTGILK-LQELGDDTTTGDTSNQMQPYLKAVSIRDASSIKR 411
            :|..:|.....||.|.|:.|..|.:.|:.: |....:..::|.       :...:.|.....:.:
 Worm   218 LPRAVDCVADLDLADRVKPGDRVRIIGVFRVLPNKQNGVSSGS-------FRSIIIINHIQMLSK 275

  Fly   412 E----FSERDLEAIVMINAEPNSFKLLVQSIAPEVYGHELPKAACLLSLLGG------KGAETEA 466
            |    |..:|::.:..|:...|.|:||.:|:||.:.|||..|.|.|..||||      .|:....
 Worm   276 EVIPNFEPQDVKDVRKISKSRNPFELLARSLAPSICGHEETKKALLCLLLGGMEKILNNGSRLRG 340

  Fly   467 -INVLLVGDPGIGKTKILQSCAQIAERGAHVSGKRGAQSAQQLGVTFA-----GRNKRVLQAGSL 525
             |||||:|||.:.|:::|:...::|.|....:| ||:..   :|:|.|     ...:|.|:||::
 Worm   341 DINVLLIGDPSVAKSQLLRYVLRMAPRAITTTG-RGSSG---VGLTAAVTTDPDSGERRLEAGAM 401

  Fly   526 MMASGGGHCTLDDVDKLAS-KQAVLLQCLQSEEVNLPLAGAFASFPAQPSVIACANPQRGQYDEG 589
            ::|..|..| :|:.||::. .:..:.:.::...|.:..||..|...|:.||:|.|||..|:|:..
 Worm   402 VLADRGVVC-IDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHAKLNARCSVLAAANPVYGRYNPF 465

  Fly   590 RYLLQNINISPSLLREFHLVYILLDK-PSERDMSLTAHVRALHAGARKRARIAARYALKP----- 648
            :..::||.:..|||..|.|:::|||: .:::|.::..||..||.   .|.:..|...:.|     
 Worm   466 KSPMENIGMQDSLLSRFDLIFVLLDEHDADKDANVAEHVLKLHT---YRTQGEADGTVLPMGGGV 527

  Fly   649 -----------KMSDSMCEVSLNVPAAGKDDDTIKTEDDNDSIMQQDYDLDKRLEVLPEEGDLDL 702
                       |.|.|:.|.  |...||..|..|.|.|                           
 Worm   528 ETISTINMETKKASSSIYEE--NTQWAGIQDTKILTMD--------------------------- 563

  Fly   703 LPPILIKKFLSYARQELNPVLNEDASNAVLRYFLELKG--SCNLDEDVSSQIGAGQLLAIIHLSQ 765
                .::|::..|| .:.|.|.::|:..:...:.:::.  ....|::.:..:.|.||..:|.||.
 Worm   564 ----FMRKYIHLAR-SVQPKLTDEATEYISEVYADIRSFDITKTDQERTMPVTARQLETLIRLST 623

  Fly   766 ARARLDLSHVVSPQHVRDVIALL 788
            |.|:...|..|..:.......||
 Worm   624 AIAKARFSKKVEREDTEKAYNLL 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
recNP_001262615.1 RNR_PFL <117..200 CDD:299130
MCM 243..792 CDD:214631 123/478 (26%)
P-loop_NTPase 468..606 CDD:304359 45/143 (31%)
mcm-3NP_506706.1 MCM_N 25..109 CDD:379644
MCM 114..649 CDD:214631 123/478 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.