DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rec and Mcm3

DIOPT Version :9

Sequence 1:NP_001262615.1 Gene:rec / 49241 FlyBaseID:FBgn0003227 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_032589.1 Gene:Mcm3 / 17215 MGIID:101845 Length:812 Species:Mus musculus


Alignment Length:714 Identity:164/714 - (22%)
Similarity:300/714 - (42%) Gaps:140/714 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 DRGFFPLCAAGIKSDAQLKEVWPSLSEDIREHPLRTLGTLSLAMHTVVVNHQLDCNDSTTAMVST 219
            |:|.:......:.||.|.:.: .|:::..|::..|....|:.|...:|. .|....|...::.:|
Mouse    28 DQGIYQNKVRELISDNQYRLI-VSVNDLRRKNEKRANRLLNNAFEELVA-FQRALKDFVASIDAT 90

  Fly   220 -PEQYVLPTPRVRKIYARPDDFVPVESIEGISHSRVDTLFS--------IRGFVSNVGEPSYSLT 275
             .:||             .:.::.:|...|..|....||.|        :.|.|:          
Mouse    91 YAKQY-------------EEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVT---------- 132

  Fly   276 WQAFRCSRCQMEIAMRQRGTFQPRPYQCKRS--ECVARDEFVPLRSSPYTRL-----SIRQIIRV 333
                :||..:.::.               ||  .|.|..:.:..|.|..|.|     |.....:.
Mouse   133 ----KCSLVRPKVV---------------RSVHYCPATKKTIERRYSDLTTLVAFPSSSVYPTKD 178

  Fly   334 EESS-------LNLVHDFET-------------SMPAEMDVELRHDLVDAVRVGQEVVVTGILKL 378
            ||::       |::..|.:|             .:|..:||.|..||||.|:.|..:.|.|..: 
Mouse   179 EENNPLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDKVKPGDRIQVVGTYR- 242

  Fly   379 QELGDDTTTGD----TSNQMQPYLKAVSIRDAS-SIKREFSERDLEAIVMIN--AEPNSFKLLVQ 436
                  ...|.    ||...:..|.|.:::..| .|:..||..|:..|...:  ...:.|:.|.:
Mouse   243 ------CLPGKKGCYTSGTFRTVLIACNVKQMSKDIQPAFSADDIAKIKKFSKTRSKDVFEQLAR 301

  Fly   437 SIAPEVYGHELPKAACLLSLLGGKGAETE-------AINVLLVGDPGIGKTKILQSCAQIAERGA 494
            |:||.::||:..|.|.|..||||...|.|       .||:||:|||.:.|:::|:.....|.|..
Mouse   302 SLAPSIHGHDYVKKAILCLLLGGVERELENGSHIRGDINILLIGDPSVAKSQLLRYVLCTAPRAI 366

  Fly   495 HVSGKRGAQSAQQLGVTFA-----GRNKRVLQAGSLMMASGGGHCTLDDVDKLAS-KQAVLLQCL 553
            ..:| ||:..   :|:|.|     ...:|.|:||::::|..|..| :|:.||::. .:..:.:.:
Mouse   367 PTTG-RGSSG---VGLTAAVTTDQETGERRLEAGAMVLADRGVVC-IDEFDKMSDMDRTAIHEVM 426

  Fly   554 QSEEVNLPLAGAFASFPAQPSVIACANPQRGQYDEGRYLLQNINISPSLLREFHLVYILLDK-PS 617
            :...|.:..||..|...|:.||:|.|||..|:||:.:..::||.:..|||..|.|::|:||: ..
Mouse   427 EQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFIMLDQMDP 491

  Fly   618 ERDMSLTAHVRALHAGARKRARIAARYALKPKMSDSMCEVSLNVPAAGKDDDTIKTEDDNDSIMQ 682
            |:|..::.||..:|           :|....:.......:..:|.....||.....:|..|:.:.
Mouse   492 EQDREISDHVLRMH-----------QYRAPGEQDGDALPLGSSVDILATDDPDFTQDDQQDTRIY 545

  Fly   683 QDYD-----LDKRLEVLPEEGDLDLLPPILIKKFLSYARQELNPVLNEDASNAVLRYFLELKGSC 742
            :.:|     ..|:.|        .::....:||::..|: .:.|.|.::::..:...:..|:...
Mouse   546 EKHDSLLHGTKKKKE--------KMVSAAFMKKYIHVAK-IIKPTLTQESAAYIAEEYSRLRSQD 601

  Fly   743 NLDEDV--SSQIGAGQLLAIIHLSQARARLDLSHVVSPQHVRDVIALLTESITQTSLKEGSSRQ 804
            ::..|.  :|.:.|..|..:|.|:.|.|:..:|..|..|...:.:.|:..:..:..|::...|:
Mouse   602 SMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAVELVQYAYFKKVLEKEKKRK 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
recNP_001262615.1 RNR_PFL <117..200 CDD:299130 10/44 (23%)
MCM 243..792 CDD:214631 146/611 (24%)
P-loop_NTPase 468..606 CDD:304359 45/143 (31%)
Mcm3NP_032589.1 MCM_N 17..129 CDD:291233 22/115 (19%)
MCM 109..654 CDD:214631 144/605 (24%)
P-loop_NTPase 340..479 CDD:304359 45/143 (31%)
Arginine finger 477..480 0/2 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 664..744 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.