DRSC/TRiP Functional Genomics Resources

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Protein Alignment rec and mcm-4

DIOPT Version :9

Sequence 1:NP_001262615.1 Gene:rec / 49241 FlyBaseID:FBgn0003227 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_490962.1 Gene:mcm-4 / 171793 WormBaseID:WBGene00003156 Length:823 Species:Caenorhabditis elegans


Alignment Length:742 Identity:178/742 - (23%)
Similarity:311/742 - (41%) Gaps:191/742 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 AMHTVVVNHQ------LDCNDSTTAMVSTPEQYV--LPTPRVRKIYARPDDFVP----------- 242
            |:|.:.|||.      |:|||:....::...:::  ......||:.|.|.|.:|           
 Worm   146 ALHEIDVNHPYYMERLLECNDAEVTHINLNLKHLNAFSEALYRKVIAYPADVIPYLDIVVNEVFA 210

  Fly   243 -------VESIE-------------GISHSRVDTLFSIRGFVSNVGEPSYSLTWQAFRCSRCQME 287
                   .:|||             |::.:.||.|.:|.|.|:........:....|:|:.|...
 Worm   211 ERFNRTLAQSIELRPFNAQKTRNMRGLNPNDVDQLITISGMVTRTSSLIPEMRSGYFQCAVCAFG 275

  Fly   288 IAMR-QRGTFQPRPY---QCKRSECVA----RDEFVPLRSSPYTRLSIRQIIRVEESSLNLVHDF 344
            |... .:|..: .|.   .|..:.|..    |..|:.           :|:::::||..::... 
 Worm   276 IESEVDKGRIE-EPVVCTNCSNTHCFQLVHNRSVFLD-----------KQVVKLQESPDDMPSG- 327

  Fly   345 ETSMPAEMDVELRHDLVDAVRVGQEVVVTGILKLQELGDDTTTGDTSNQMQPYLKAV---SI--- 403
            ||  |..:.|.....||::|:.|..:.||||.:        .||...|..|..|.:|   ||   
 Worm   328 ET--PHTVSVYAHGSLVESVQPGDRITVTGIFR--------ATGMKVNPKQRALASVYRTSIDAL 382

  Fly   404 ----RDASSIKRE----FSERDLEAIVMINAEPNSFKLLVQSIAPEVYGHELPKAACLLSLLGGK 460
                .|.|.:.::    .:|..::.|:.::..|:....|.|||||.:|.|:..|...|..|.||.
 Worm   383 HFRKMDTSRLHQDNGETITEERIQQIIELSKRPDIMDALAQSIAPSIYEHDDVKRGLLCLLFGGT 447

  Fly   461 GAETEA---------INVLLVGDPGIGKTKILQSCAQIAERGAHVSGKRGAQSAQQLGVTF---- 512
            ..:.|.         ||:||.||||..|:::||...::..|..:.|||    .:..:|:|.    
 Worm   448 RKDDETTNKTKLRSEINILLCGDPGTSKSQMLQYVYRLLPRSQYTSGK----GSSAVGLTASVSR 508

  Fly   513 -AGRNKRVLQAGSLMMASGGGHCTLDDVDKL-ASKQAVLLQCLQSEEVNLPLAGAFASFPAQPSV 575
             |...:.|||.|:|::|. .|.|.:|:.||: .|.::||.:.::.:.:::..||......|:.||
 Worm   509 DADTKQLVLQTGALVLAD-NGVCCIDEFDKMNESARSVLHEVMEQQTLSIAKAGIICQLNARASV 572

  Fly   576 IACANPQRGQYDEGRYLLQNINISPSLLREFHLVYILLDKPSE-RDMSLTAHVRALHAGARKRAR 639
            :|.|||...:::..:.:::||.:..:||..|.|:::::|...| :|..|..|:            
 Worm   573 LAAANPVDSKWNRNKTIVENITLPHTLLSRFDLIFLIVDAQDEMQDRRLGNHL------------ 625

  Fly   640 IAARYALKPKMSDSMCEVSLNVPAAGKDDDTIKTEDDNDSIMQQDYDLDKRLEVLPEEGDLDLLP 704
                             |||.....|..:.|                         |..|::|| 
 Worm   626 -----------------VSLYFENDGNQEKT-------------------------EHVDMNLL- 647

  Fly   705 PILIKKFLSYARQELNPVLNEDASNAVLRYFLELK--GSCNLDEDVSSQIGA--GQLLAIIHLSQ 765
                :.:::||:..::|.|:|:||..::..:|.::  |:.:      .||.|  .||.::|.||:
 Worm   648 ----RDYIAYAKANIHPKLSEEASQFIIEKYLFMRKAGAQH------GQITAYPRQLESLIRLSE 702

  Fly   766 ARARLDLSHVVSPQHVRDVIALLTESITQTSLKEGSSRQGTRGGGGAGGGAGKSAQLRNFLELTK 830
            |.|::.||..||...|.....|..|::.|:::...:.|...     |...:|.||..|..:|   
 Worm   703 AHAKIRLSQEVSVDDVEKAFTLWREALKQSAVDPSTGRVDV-----AILASGMSASGRKAVE--- 759

  Fly   831 RRSAALGRRIFEFDELKEIGTRAGILT 857
                |:...:     ||::.|..|.:|
 Worm   760 ----AMCEAV-----LKQLKTAKGFVT 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
recNP_001262615.1 RNR_PFL <117..200 CDD:299130 1/2 (50%)
MCM 243..792 CDD:214631 149/603 (25%)
P-loop_NTPase 468..606 CDD:304359 44/143 (31%)
mcm-4NP_490962.1 MCM_N 121..226 CDD:317013 18/79 (23%)
MCM_OB 230..730 CDD:330264 146/592 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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