DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mod(mdg4) and bab1

DIOPT Version :9

Sequence 1:NP_788698.1 Gene:mod(mdg4) / 49228 FlyBaseID:FBgn0002781 Length:610 Species:Drosophila melanogaster
Sequence 2:NP_728565.1 Gene:bab1 / 38116 FlyBaseID:FBgn0004870 Length:977 Species:Drosophila melanogaster


Alignment Length:611 Identity:135/611 - (22%)
Similarity:225/611 - (36%) Gaps:164/611 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ADDEQFSLCWNNFNTNLSAGFHESLCRGDLVDVSLAAEGQIVKAHRLVLSVCSPFFRKMFTQMPS 66
            :..:||.|.|||:.|||:..|.:.|.....|||:||.:|:.:|||::|||.|||:|:.:..:.|.
  Fly    97 SSSQQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQTLLAETPC 161

  Fly    67 NTHAIVFLNNVSHSALKDLIQFMYCGEVNVKQDALPAFISTAESLQIKGLTD------------- 118
            . |.||.:.:|:.|.||.:::|||.||:||.||.:...:..||.|:::||.|             
  Fly   162 Q-HPIVIMRDVNWSDLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGLADVTHMEAATAAAAA 225

  Fly   119 --NDPAPQPPQESSPPPAAPHVQQQQI-------------------PAQ----RVQRQQPRASAR 158
              ::..|..|:||:......|.::::.                   ||:    .::|||.|...:
  Fly   226 ASSERMPSSPKESTSTSRTEHDREREAEELLAFMQPEKKLRTSDWDPAELRLSPLERQQGRNVRK 290

  Fly   159 YKIETVDDGLGDEKQSTTQIVIQTTAAPQATIVQQQQPQQAAQQIQSQQLQTGTTTTATLVSTNK 223
            .:..:.|             .|....||         |...:..|.:::::         :...:
  Fly   291 RRWPSAD-------------TIFNPPAP---------PSPLSSLIAAERME---------LEQKE 324

  Fly   224 RSAQR--SSLTPASSSAGVKRSKTSTSANVMDPLDSTTETGATTTAQLVPQQITVQTSVVS---- 282
            |..||  |.:||...                .|:.|.:..|||...:.....:.:.:...:    
  Fly   325 RERQRDCSLMTPPPK----------------PPMSSGSTVGATRRLETAIHALDMPSPAATPGPL 373

  Fly   283 AAEAKLHQQSPQQVRQEEAEYIDLPMELP------TKSEPDYSEDHGDAAGDAEGTYVEDDTYGD 341
            :..::.|.|||||  |:..:...||:.||      ....|..|:..|.|...|...         
  Fly   374 SRSSRPHSQSPQQ--QQAQQQGQLPLPLPLHPHHHASPAPHPSQTAGSAHHPASPA--------- 427

  Fly   342 MRYDDSYFTENEDAGNQTAANTSGGGVTATTSKAVVKQQSQNYSESSFVDTSGDQGNTEAQAATS 406
               .||.|.....|....|...||.|...:....:......::.....  ..|..|...|....|
  Fly   428 ---GDSRFPLGPAAAMAAARELSGLGPGPSAEPRLPPPPPHHHGGGGV--GGGGVGGGGAGGVGS 487

  Fly   407 ASATKIPPRKRGRPKTKVEDQTPKPKLLEKLQAATLNEEASEPAVYASTTKGGVKLIFNGH---- 467
            ...:.:           .:|...||.:.|.::    .||.:             |::.|.|    
  Fly   488 GGGSSL-----------ADDLEIKPGIAEMIR----EEERA-------------KMMENSHAWMG 524

  Fly   468 -----LFKFSFRKADYSVFQCC------------YREHGEECKVRVVCDQKRVFPYEGEHVHFMQ 515
                 |...|::....|::|.|            :||.|.....|.....:.:|....|.:...|
  Fly   525 ATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQ 589

  Fly   516 ASDKSCLP-SQFMPGESGVISSLSPS 540
            |:.|..:| ..|:...:.|.:.|.||
  Fly   590 AARKYDIPYPTFVLYANRVHNMLGPS 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mod(mdg4)NP_788698.1 BTB 22..118 CDD:279045 40/95 (42%)
BTB 33..118 CDD:197585 37/84 (44%)
FLYWCH 452..512 CDD:282369 14/80 (18%)
bab1NP_728565.1 BTB 117..216 CDD:279045 41/99 (41%)
BTB 128..213 CDD:197585 37/85 (44%)
HTH_psq 569..614 CDD:283007 10/44 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9675
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
44.010

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