DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment epsilonTry and svh-1

DIOPT Version :10

Sequence 1:NP_525112.1 Gene:epsilonTry / 49080 FlyBaseID:FBgn0010425 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_501379.2 Gene:svh-1 / 182375 WormBaseID:WBGene00006620 Length:951 Species:Caenorhabditis elegans


Alignment Length:245 Identity:74/245 - (30%)
Similarity:107/245 - (43%) Gaps:39/245 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 RIVGGYETSIDAHPYQVSLQRYG--SHFCGGSIYSHDIVITAAHCLQSIE-AKDLKIRVGSTYW- 90
            |:|||:||...|.|:..:|:...  :|.||.||.....:||||||.:..| ....::.||.  | 
 Worm   712 RVVGGFETVPGAFPWTAALRNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGD--WD 774

  Fly    91 --RSGGS--------VHSVRSFRNHEGYNSRTMVNDIAIIRIE-SDLSFRSSIREIRIADSN--- 141
              ::.|:        :|....:::       ...:||||:.|. ..:.|....:.|.:...:   
 Worm   775 NNQTDGNEQIFYLQRIHFYPLYKD-------IFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVY 832

  Fly   142 -PREGATAVVSGWGTTESGGSTIPDHLLAVDLEIIDVSRCRSDEFGYGKKIKDTMLCAYAPHK-D 204
             |  |...||||||   |.|....:.|.|..:.||:...|.:....|....:......|.... |
 Worm   833 TP--GRQCVVSGWG---SMGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGYLEGGID 892

  Fly   205 ACQGDSGGPLVSGDR-----LVGVVSWGYGCGDVRYPGVYADVAHFHEWI 249
            :||||||||......     |.||:|||.||...:.||:|..||.:..||
 Worm   893 SCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWI 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
epsilonTryNP_525112.1 Tryp_SPc 30..249 CDD:214473 72/243 (30%)
svh-1NP_501379.2 KR 227..306 CDD:214527
LDLa 320..355 CDD:238060
PAN_AP_HGF 373..434 CDD:238532
LDLa 558..590 CDD:197566
SR 599..681 CDD:214555
Tryp_SPc 713..945 CDD:238113 73/244 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.