DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)73Ah and Pcgf6

DIOPT Version :9

Sequence 1:NP_001246797.1 Gene:l(3)73Ah / 48903 FlyBaseID:FBgn0002283 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_001347561.1 Gene:Pcgf6 / 71041 MGIID:1918291 Length:359 Species:Mus musculus


Alignment Length:215 Identity:86/215 - (40%)
Similarity:127/215 - (59%) Gaps:26/215 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ERRVKLKTINPHITCKICGGYFIDATTVTECLHTFCKSCLVKHLEEKKTCPTCDNIIHQSHPLQY 66
            ||.:.|..:.|:|.|.||.||.|||||:|||||||||||:|:|......||.|:.::||:.||..
Mouse   123 ERLINLVELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYN 187

  Fly    67 ISFDRTMQDIVYKLVPKLQEDESRRERDFYKSRNMPCPKDI----TQNHEDDNEKVMDAHAESDF 127
            |..||.:||||||||..|:|.|.::..||||.|.:..||..    ..:.:...:||:    ||.|
Mouse   188 IRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAAPQPVPSSKGKTKKVL----ESVF 248

  Fly   128 H---RLDEQVNVCLECISNN-----------FKNLQRRFIRCSSQATITHLKKLVAKKILNGIEK 178
            .   .||  :::.||.|..|           |:.|:::|:|.|.:|||.|::|.:.:|:  |::.
Mouse   249 RIPPELD--MSLLLEFIGANEDTGHFKHSLRFEPLEKKFVRVSGEATIGHVEKFLRRKM--GLDP 309

  Fly   179 YREIDILCNEELLGKDHTLK 198
            ..::||:|.:.||.:..||:
Mouse   310 ACQVDIICGDHLLERYQTLR 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)73AhNP_001246797.1 RING-HC_PCGF3 13..59 CDD:319649 27/45 (60%)
RAWUL_PCGF3 133..217 CDD:340603 23/77 (30%)
Pcgf6NP_001347561.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..116
RING-HC_PCGF6 133..177 CDD:319652 28/43 (65%)
RING-HC finger (C3HC4-type) 137..175 CDD:319652 25/37 (68%)
RAWUL 284..>331 CDD:318447 17/48 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2660
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1203951at2759
OrthoFinder 1 1.000 - - FOG0000290
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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