DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)73Ah and pcgf5b

DIOPT Version :9

Sequence 1:NP_001246797.1 Gene:l(3)73Ah / 48903 FlyBaseID:FBgn0002283 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_001038700.1 Gene:pcgf5b / 692252 ZFINID:ZDB-GENE-060512-34 Length:232 Species:Danio rerio


Alignment Length:234 Identity:92/234 - (39%)
Similarity:150/234 - (64%) Gaps:23/234 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RRVKLKTINPHITCKICGGYFIDATTVTECLHTFCKSCLVKHLEEKKTCPTCDNIIHQSHPLQYI 67
            |:..::..|..|||.:|.||.|..||||||||||||||:|:|.|:...||.|...:|:::||:.:
Zfish     5 RKHLVRDFNHFITCFVCKGYLIKPTTVTECLHTFCKSCIVQHFEDSNDCPKCGIQVHETNPLEML 69

  Fly    68 SFDRTMQDIVYKLVPKLQEDESRRERDFYKSR-----NMPCPKDITQNHEDDNEKVMDAHAESDF 127
            ..|.|::::::||||.|:|.|.::|.:|::.:     |.|..|....:.|||::      .:.|:
Zfish    70 RLDNTLEEVIFKLVPGLREKEQQQEDEFWRRKESNDENGPMCKKRRVDEEDDDK------GDGDY 128

  Fly   128 HRLDEQVNVCLECI-------SNNFKNLQRRFIRCSSQATITHLKKLVAKKILNGIEKYREIDIL 185
            ||.|.|:.:||:|:       .|..|.|.::|||||::.|:..:||.::.|:  .:....|:|:|
Zfish   129 HRSDPQIAICLDCLRINGQMGENIVKGLMKKFIRCSTRVTVGTIKKFLSLKL--KLPSSYELDVL 191

  Fly   186 CNEELLGKDHTLKFVYVTRWRFRDP---PLRLQFRPRVE 221
            ||.|::|||||::|:|:||||.|..   |:.|::|||::
Zfish   192 CNGEIMGKDHTMEFIYMTRWRLRGENVYPMVLEYRPRID 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)73AhNP_001246797.1 RING-HC_PCGF3 13..59 CDD:319649 27/45 (60%)
RAWUL_PCGF3 133..217 CDD:340603 36/93 (39%)
pcgf5bNP_001038700.1 zf-C3HC4 18..56 CDD:278524 24/37 (65%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..128 8/40 (20%)
RAWUL 150..226 CDD:292824 32/77 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9708
eggNOG 1 0.900 - - E1_KOG2660
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 198 1.000 Inparanoid score I3772
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1203951at2759
OrthoFinder 1 1.000 - - FOG0000290
OrthoInspector 1 1.000 - - otm26311
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X607
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.870

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