DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mtr4 and EMB25

DIOPT Version :9

Sequence 1:NP_524929.1 Gene:Mtr4 / 48782 FlyBaseID:FBgn0001986 Length:1055 Species:Drosophila melanogaster
Sequence 2:NP_177164.1 Gene:EMB25 / 843343 AraportID:AT1G70070 Length:1171 Species:Arabidopsis thaliana


Alignment Length:1152 Identity:300/1152 - (26%)
Similarity:480/1152 - (41%) Gaps:256/1152 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 KEATSSKGAEGDDKGDVTEEPTKRLKQEASTVAVDDDNNADDEPTRTLDIDDSATLEALRTRIVT 113
            :|....:..|.:|..|...:....:..|   :...||::.|:|...::|:...:..|.:..|  .
plant    65 EEDDEEEEEEDEDDDDEAADEYDNISDE---IRNSDDDDDDEETEFSVDLPTESARERVEFR--W 124

  Fly   114 HLLDAPKSCTHEVAAHPDQEYIPLKPFSGVPAKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAG 178
            ..::..:|...:...    |.|.:.....:    |.|.:|.|||.||.......||:|||.||:|
plant   125 QRVEKLRSLVRDFGV----EMIDIDELISI----YDFRIDKFQRLAIEAFLRGSSVVVSAPTSSG 181

  Fly   179 KTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKD--VGLVTGDVTINPSASCLIMTT 241
            ||::||.|...::|..:|:.||||:|||||||||||.:.|.|  |||:|||..||..|..:||||
plant   182 KTLIAEAAAVSTVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTT 246

  Fly   242 EILRNMLYR-------GSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIP 299
            ||||||||:       |:.:. .|..:|.||:||:.|..||.||||.:|..|..|:.:.||||:.
plant   247 EILRNMLYQSVGMASSGTGLF-HVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVA 310

  Fly   300 NARQFAEWVCHLHKQPCHVVYTDYRPTPL------QHYIFPAGGDGIHLIVDEKG----QFKEDN 354
            |..:.|.|:..:|.: ..:|.:..||.||      :|.:.|        ::||||    :....|
plant   311 NPDELAGWIGEIHGK-TELVTSTRRPVPLTWYFSTKHSLLP--------LLDEKGINVNRKLSLN 366

  Fly   355 FTTAMAVLANAGEAGKGDQKGR---HGGIKGTN---------AGQTNIFKI----VKMIME---- 399
            :....|..|...:...|.:|.|   .||....|         ..:..|.||    |..|.:    
plant   367 YLQLSASEARFRDDDDGYRKRRSKKRGGDTSYNNLVNVTDYPLSKNEINKIRRSQVPQISDTLWH 431

  Fly   400 ---RNFAPVIIFSFSKKDCEIYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTEEDRRL-PQV--E 458
               :|..|.|.|.|:::.|:. |:|..       :..:|:|:...:.:::..::.|.| |..  |
plant   432 LQGKNMLPAIWFIFNRRGCDA-AVQYV-------ENFQLLDDCEKSEVELALKKFRVLYPDAVRE 488

  Fly   459 NVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGK 523
            :....|.|||..||.|.||:.|..||.||..||:|.:|||||.|.|:||||||.:.::..|..|.
plant   489 SAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGN 553

  Fly   524 KFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAVGRDIVQGKADPINSAFHLTYNMVLN 588
            :...:...|..||||||||||:|:||..:|:............:|.....|:.|.|..:|.||||
plant   554 ERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTASYGMVLN 618

  Fly   589 LLRVEEI--------------------NPEYMLERSF--YQFQN-----QAALPGLHDQVEQKTL 626
            |:...::                    ..:.::|:||  |...|     :..|..:.:::|..:.
plant   619 LVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTVAAKQELAEIDNKIEILSS 683

  Fly   627 ELNK----------LTIKDEHNIASY-HHIRSQLDQHGKQFRQW------ITKPQYLLPFLQPGR 674
            |::.          |:.:|...|... ..:|.:..:..:|.|:.      ..||  ||..::.|.
plant   684 EISDEAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRRRMELERFLALKP--LLKGMEEGN 746

  Fly   675 L------VKVAAGSQEYDWGIVLNFKKQDQSRK--NPLKAEPSVTIDVLLHVSEAAAKTGDTEPC 731
            |      .|.:.|.::....:.|......|..|  ..:..:.|..::::  ..|.||    .||.
plant   747 LPFICLEFKDSEGREQSVPAVYLGHIDSFQGSKLQKMMSLDESFALNLI--EDELAA----DEPG 805

  Fly   732 KPNERGCMEVVPVAHTLITQISS------------IRVYFPN---DLRSADNRRAVLKTIQEAKK 781
            |||      |.|..:..:...:|            .|..|||   .|..|..|..:...:.:|..
plant   806 KPN------VKPSYYVALGSDNSWYLFTEKWVRTVYRTGFPNIALALGDALPREIMKNLLDKADM 864

  Fly   782 R-----------------------FPLGPPVLNPIDDMNIKDREFRDIVNTISQFEKRLEEHPLH 823
            :                       :.|..|||:.:.|                      |:..||
plant   865 QWDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSD----------------------EDEVLH 907

  Fly   824 KSPELERIHRRYQD----------KVTLQKQLQDLKAELKAAR-SLLQMDELKHR-KRVLRRMGY 876
            .|.|.:...::|::          |::..:..::.|..|:.|. ::.:|..||.| :|::.|:..
plant   908 MSEEYDNAAQKYKEQRSKISRLKKKMSRSEGFREYKKILENANLTVEKMKRLKARSRRLINRLEQ 972

  Fly   877 CKPGDVIEFK----------------------GRVACELSSADELLMTEMIFNGVFNDLTAPQAV 919
            .:|....:|.                      |..|..:...:||.:..::.|....||..||..
plant   973 IEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGENELWLAMVLRNKALVDLKPPQLA 1037

  Fly   920 ALLSCFVCDEKSSESVK-----SATELSGPLRSMQDLARRIA-KVSTECKLDLDADTYVDKFKPF 978
            .     ||....||.:|     ....:..|..::.|:...:. :.|:..||....:..:    |.
plant  1038 G-----VCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSLIKLQEKHEVMI----PC 1093

  Fly   979 LMDV-----VLAWCKGSSFLAVCKMTDIFEGSIIRCMRRLEELLRQM 1020
            .:||     |.||..|.|:..:.....:.||.:.|.:||..:||.|:
plant  1094 CLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQI 1140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mtr4NP_524929.1 Dob10 91..1055 CDD:226947 292/1110 (26%)
DEAD 154..299 CDD:278688 79/153 (52%)
HELICc 390..554 CDD:238034 65/177 (37%)
rRNA_proc-arch 600..853 CDD:289976 58/332 (17%)
DSHCT 881..1048 CDD:285374 36/173 (21%)
EMB25NP_177164.1 DEXDc 150..338 CDD:214692 89/193 (46%)
DEAD 157..315 CDD:278688 80/158 (51%)
HELICc 497..574 CDD:197757 39/76 (51%)
ARGLU 645..744 CDD:291991 18/100 (18%)
DSHCT 999..1166 CDD:285374 35/151 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4581
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D176060at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100340
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.720

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