DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mtr4 and C28H8.3

DIOPT Version :9

Sequence 1:NP_524929.1 Gene:Mtr4 / 48782 FlyBaseID:FBgn0001986 Length:1055 Species:Drosophila melanogaster
Sequence 2:NP_498283.1 Gene:C28H8.3 / 175834 WormBaseID:WBGene00016194 Length:1714 Species:Caenorhabditis elegans


Alignment Length:963 Identity:219/963 - (22%)
Similarity:335/963 - (34%) Gaps:335/963 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DEVTPSVPPPALNQEEKPSGSSASKKGNKRQADGTTASKEATSSKGAEGDDKGDVTEEPTKRLKQ 75
            :|||          :||.:| .....|.|:|..|....|.||..   .|..|.|:..|..|:.|.
 Worm   578 EEVT----------DEKKTG-KGGWSGQKQQKPGAGGKKGATKE---SGKSKKDLILEANKKAKD 628

  Fly    76 E------------------ASTVAVDDDNNADDEP-TRTLDIDDSATLEALRT------------ 109
            :                  .|.:.:::..::.|.| ||.|.:.:.|..|. ||            
 Worm   629 QKVAESEKVKIKYGCQQGKESVIFLNNLYSSLDLPETRALCVYEIAVREG-RTIFDQHQGTDKQE 692

  Fly   110 -------RIVTHLLDAPKSCTHEVAAHPDQEYIPL------------KPFS---------GV--- 143
                   .:|.||.|........:.:...::.:.|            ||.|         |:   
 Worm   693 VRRNAAIDLVGHLKDCFVKHWDHLESKQKEQIVDLWVSLGFEAPAGSKPSSEAKQKKLNLGINMV 757

  Fly   144 ----------------PAKE---YPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAK 189
                            |.|:   ..|..|.:||:.:..:|...|.|:.|.||||||.|:.|.|.|
 Worm   758 YYQLQYGGELIDIQSDPKKDDRVSGFAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEK 822

  Fly   190 SLAAKQR--VIYTTPIKALSNQKFREFTDEFKD---------VGLVTGDVTINPSASCLIMTT-- 241
            .|.:...  |:|..|.|||.||........|::         .|.:|.:.:.| :..|.::.|  
 Worm   823 VLRSSDNDVVVYVAPSKALINQVCGSVYARFRNKSMKRGISLFGTLTQEYSQN-AMQCQVLITVP 886

  Fly   242 EILRN-MLYRGSEIMR---EVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNAR 302
            |.|:. ||.|...:.:   .:.:|||||:|.:...|...:||:.|:|:  ...::.|||||.||.
 Worm   887 ECLQELMLSRTPAVQKFVSHIKYVVFDEVHSIGASEESHIWEQLLLLI--QCPFLALSATIGNAN 949

  Fly   303 QFAEWVCHLH------KQPCHVVYTDYRPTPLQHYIF----PAGGD--GIHLIVDEKG------- 348
            :..||:....      |:...::....|.:.|:..|.    |.|.|  .:|....|:.       
 Worm   950 KLHEWLNSSEQAKSAGKRKVELINYGERYSELELSILNINDPHGEDDGAVHKKAGERAVIPLMPY 1014

  Fly   349 -----------QFKEDNFTTAMAVL------ANAGEAGKGDQK-----GRHGG------------ 379
                       ...||...||..||      |...:|.|.:.:     |:||.            
 Worm  1015 GVYMPEKLRMFSIPEDQQLTARQVLHLYNMMAEVDDATKKEFEPCKFFGQHGTKAVWISRSELRR 1079

  Fly   380 ---------IKGTNAGQTNIFKIVKMIME----------RNF----------------------A 403
                     ::..::.:..|..|:|::.|          |.|                      .
 Worm  1080 LENALKERFMEWLSSDEQKINSILKILKEPVNTQLSYRARPFNKEKIANDYIVTLVDDLKEKGEL 1144

  Fly   404 PVIIFSFSKKDCEIYAMQMA----------------KLDFNTPDEKKLV---------------- 436
            |.|.|:..:..||..|:.:|                |..:...||.|||                
 Worm  1145 PAICFNDDRHVCEKLAVTLANELERRELEYMETDEFKNKYMIKDESKLVKLAKRKRDDAEKKKKG 1209

  Fly   437 -------DEVFNNAMDVLTEEDRRL----------------PQV------------------ENV 460
                   .|..::.||||..:..:|                |.:                  :.:
 Worm  1210 DKDEDAGPEKDDDEMDVLAMKKAKLARALERFKLRGRNGGDPDIYAKMVERMQKGAKTRESTQVL 1274

  Fly   461 LPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKKF 525
            |.|..||||.||.||..:.:..:|:||..|.:..||:|.|.::|:|||.:||:|       |...
 Worm  1275 LKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMF-------GVDT 1332

  Fly   526 RWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAVGRDIVQGKADPINSAFHLTYNMVLNLL 590
            ..::...|.||:|||||||.|..|.||.|                 :.|.:....|....:.|| 
 Worm  1333 LQLTPLLYRQMSGRAGRRGFDHSGNVIFM-----------------SIPTSKVRRLLTASLSNL- 1379

  Fly   591 RVEEINPEY---MLERSFYQFQNQAALPGLHDQVEQK--TLELNKLTIKD--EHNIASYHHIRSQ 648
               :.||.:   .|.|.|.....|..|    ::..||  |::......|.  ||:.:.  |.|.:
 Worm  1380 ---QGNPPFTVLFLLRLFAYVHQQDIL----NEEGQKVSTMKQRAFAAKSLLEHSFSI--HTRRE 1435

  Fly   649 LDQHG---KQFR-------QWITKPQYLLPFLQPGRLVKVAAGSQEYDWGIVL 691
            . |.|   ||.|       |.:...|.|.||.:.....::|..|.....|.:|
 Worm  1436 A-QDGILQKQLRMFSAFSFQLLRHLQLLSPFGEGKNFAEMAIHSSSGANGTLL 1487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mtr4NP_524929.1 Dob10 91..1055 CDD:226947 198/865 (23%)
DEAD 154..299 CDD:278688 51/161 (32%)
HELICc 390..554 CDD:238034 66/268 (25%)
rRNA_proc-arch 600..853 CDD:289976 27/106 (25%)
DSHCT 881..1048 CDD:285374
C28H8.3NP_498283.1 Dob10 782..>1529 CDD:226947 179/744 (24%)
DEAD 789..945 CDD:278688 50/158 (32%)
HELICc 1274..1351 CDD:197757 34/83 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4581
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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