DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimC3 and STAB2

DIOPT Version :9

Sequence 1:NP_524928.2 Gene:NimC3 / 48772 FlyBaseID:FBgn0001967 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_060034.9 Gene:STAB2 / 55576 HGNCID:18629 Length:2551 Species:Homo sapiens


Alignment Length:140 Identity:39/140 - (27%)
Similarity:55/140 - (39%) Gaps:43/140 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 CCPGYRTILFG---FCEPV--C-QEACPAHSYCA--EPDR--CHCQRGYEPSHHHTTGHQLICRP 135
            |.|.||    |   :|:|:  | ::.|..|::|.  .|:|  |.||.||.       |...:|.|
Human   224 CLPNYR----GDGKYCDPINPCLRKICHPHAHCTYLGPNRHSCTCQEGYR-------GDGQVCLP 277

  Fly   136 V--CQ---GGCPEHSHCVAH-----NECECWPGFKDASSWFSLSLR--------CER-VQCGHEQ 181
            |  ||   |.||..|....:     :.|||...:::.......|:.        |.| ..|   .
Human   278 VDPCQINFGNCPTKSTVCKYDGPGQSHCECKEHYQNFVPGVGCSMTDICKSDNPCHRNANC---T 339

  Fly   182 RFDPGRRACV 191
            ...|||..|:
Human   340 TVAPGRTECI 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC3NP_524928.2 MSC 85..>212 CDD:286487 37/136 (27%)
STAB2NP_060034.9 EGF_3 246..275 CDD:289699 11/35 (31%)
EGF_3 326..361 CDD:289699 7/27 (26%)
Fasciclin 382..505 CDD:280607
Fasciclin 526..654 CDD:280607
EGF_3 837..865 CDD:289699
EGF_3 920..951 CDD:289699
EGF_3 957..993 CDD:289699
Fasciclin 1009..1129 CDD:280607
Fasciclin 1148..1265 CDD:280607
EGF_3 1437..1469 CDD:289699
EGF_3 1475..1511 CDD:289699
EGF_3 1517..1553 CDD:289699
EGF_3 1559..1595 CDD:289699
Fasciclin 1617..1726 CDD:280607
Fasciclin 1752..1882 CDD:280607
EGF_3 2086..2121 CDD:289699
EGF_3 2127..2164 CDD:289699
Link_domain_TSG_6_like 2198..2290 CDD:239592
FAS1 2356..2449 CDD:214719
Interaction with TMSB4X. /evidence=ECO:0000269|PubMed:18519035 2504..2514
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2512..2551
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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