DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment heph and HNRNPLL

DIOPT Version :9

Sequence 1:NP_001247399.1 Gene:heph / 48571 FlyBaseID:FBgn0011224 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_005264696.2 Gene:HNRNPLL / 92906 HGNCID:25127 Length:595 Species:Homo sapiens


Alignment Length:617 Identity:153/617 - (24%)
Similarity:261/617 - (42%) Gaps:138/617 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   304 SSPKKV-RIDEQYIYKLNYLRGSDELLSQAAVMAPASDNNNQDLATKKAKLEPG-------TVLA 360
            |||::. ..|.:|..:...|:     ..:..:...|.:..|:..||.:...:.|       ...|
Human     6 SSPRETYEEDREYESQAKRLK-----TEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA 65

  Fly   361 GGI---AKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 422
            ||.   ...|.|:|:|.:.....|||::.....||.:..|:::..|.||.:|..:..||...|:.
Human    66 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTF 130

  Fly   423 YTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANSS 487
            ....|..:.|:..:..:|..:.                                           
Human   131 AADEPVYIAGQQAFFNYSTSKR------------------------------------------- 152

  Fly   488 SDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFT 552
                           :...|||:...|.|.||.:.:::.:||:::|:|:.:....|||.:||.| 
Human   153 ---------------ITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF- 201

  Fly   553 KNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPP 617
            |.|..||::::.....||.||:.|:|.:||.|||||:|:.::.|.|||..|::.|.|:|.|.|..
Human   202 KRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGR 266

  Fly   618 GEPGVDIMPTAGGLMNTNDLLLIAARQR--------PSLSVNGLGAPGVLPPFALGLGTPLTGGY 674
            .:.|                   ..|||        .|...:|.|:.|.|        .||...|
Human   267 RDRG-------------------KGRQRQAILGEHPSSFRHDGYGSHGPL--------LPLPSRY 304

  Fly   675 ---NNALPNLAAFSLANSGALQTTAPAMRG---YSNVLLVSNLNEEMVTPDALFTLFGVYGDVQR 733
               :...|.|.|:.|.     |.::..|.|   ..:|::||.|::..:....:|.||.:||::::
Human   305 RMGSRDTPELVAYPLP-----QASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEK 364

  Fly   734 VKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPK---EGQPDAGLTR 795
            ||.:.....:||::|.:......|::||:.::|:||.:.|..||..:| :|.   |.:......:
Human   365 VKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSV-VPSQIFELEDGTSSYK 428

  Fly   796 DYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTS--NSFEV------KAFK 852
            |::.:..:||...|..:...|.|||..||..|:|...:|    |.||.  |..||      |.|.
Human   429 DFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTE----ETFTKLCNDHEVLTFIKYKVFD 489

  Fly   853 FFPKDRKMA-LLQLLSVEEAVLALIKMHNHQL 883
            ..|..:.:: ||:.....:||.||..::::|:
Human   490 AKPSAKTLSGLLEWECKTDAVEALTALNHYQI 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hephNP_001247399.1 hnRNP-L_PTB 366..898 CDD:273733 139/544 (26%)
RRM1_PTBP1_like 368..448 CDD:241132 19/79 (24%)
RRM2_PTBP1_like 516..611 CDD:241137 38/94 (40%)
RRM3_PTBP1_like 705..778 CDD:240869 22/72 (31%)
RRM4_PTBP1_like 822..897 CDD:240871 21/71 (30%)
HNRNPLLXP_005264696.2 RRM 15..>128 CDD:223796 27/117 (23%)
RRM1_hnRPLL 73..156 CDD:241225 20/140 (14%)
hnRNP-L_PTB 74..524 CDD:273733 139/544 (26%)
RRM2_hnRPLL 165..260 CDD:241230 38/95 (40%)
RRM3_hnRPLL 336..406 CDD:241144 21/69 (30%)
RRM_SF 452..524 CDD:302621 23/74 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.