DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment heph and PTB2

DIOPT Version :9

Sequence 1:NP_001247399.1 Gene:heph / 48571 FlyBaseID:FBgn0011224 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_200130.1 Gene:PTB2 / 835399 AraportID:AT5G53180 Length:429 Species:Arabidopsis thaliana


Alignment Length:519 Identity:141/519 - (27%)
Similarity:199/519 - (38%) Gaps:186/519 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   367 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCYTVT--P 427
            |||:||||:|.|..|.::|.||.|||.|.|.....|  :||||||..|...|..|:|.|..:  |
plant    17 SKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSSEP 81

  Fly   428 PQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANSSSDSNS 492
            .|:||:.||:|:||.:|                                                
plant    82 AQVRGKTVYLQYSNRQE------------------------------------------------ 98

  Fly   493 AMGILQNTSAVNAGGNTNAAGGPNTVLRVIVE---SLMYPVSLDILHQIFQRYGKVLKIVTFTKN 554
               |:.|.:..:..||         ||.|.:|   :.|  ||:|:||.:|..:|.|.||.||.|.
plant    99 ---IVNNKTTADVVGN---------VLLVTIEGDDARM--VSIDVLHLVFSAFGFVHKITTFEKT 149

  Fly   555 NSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSKLTALNVKYNNDKSRDFTN 612
            ..:|||:|:.||.:|..||..|||::|..       |.|:|:|..|..|.|.||:.:.:|||:||
plant   150 AGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTN 214

  Fly   613 PALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSVNGLGAPGVLPPFALGLGTPLTGGYNNA 677
            |.||       :.|:|                   :...|..|.||                   
plant   215 PYLP-------VAPSA-------------------IDSTGQVAVGV------------------- 234

  Fly   678 LPNLAAFSLANSGALQTTAPAMRGYSNVLLVSNLN-EEMVTPDALFTLFGVYGDVQRVKILYNKK 741
                             ....|...|||||.|..| :..||.|.|..:|..:|:||:: .:::|.
plant   235 -----------------DGKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKI-AMFDKN 281

  Fly   742 D--SALIQMAEPQQAYLAMSHL-----------------------------DKLRLWGKPIRVMA 775
            .  .||||.::.|.|.:|...|                             |:.|.:..|...:.
plant   282 GGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPVP 346

  Fly   776 SKHQAVQLPKEGQPD-----AGLTRDYSQNPLHRFKKPGSK----------NYQNIYPPSATLH 824
            ...|.||.|..|.|.     .|......|.|...:.:||.:          |:....|.|:::|
plant   347 MPQQPVQNPYAGNPQQYHAAGGSHHQQQQQPQGGWVQPGGQGSMGMGGGGHNHYMAPPSSSSMH 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hephNP_001247399.1 hnRNP-L_PTB 366..898 CDD:273733 141/519 (27%)
RRM1_PTBP1_like 368..448 CDD:241132 39/83 (47%)
RRM2_PTBP1_like 516..611 CDD:241137 43/104 (41%)
RRM3_PTBP1_like 705..778 CDD:240869 25/104 (24%)
RRM4_PTBP1_like 822..897 CDD:240871 1/3 (33%)
PTB2NP_200130.1 RRM1_PTBPH1_PTBPH2 16..96 CDD:241130 38/78 (49%)
RRM2_PTBPH1_PTBPH2 110..204 CDD:241135 41/104 (39%)
RRM3_PTBPH1_PTBPH2 243..339 CDD:241134 26/96 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1190
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15592
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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