DRSC/TRiP Functional Genomics Resources

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Protein Alignment heph and ptbp3

DIOPT Version :9

Sequence 1:NP_001247399.1 Gene:heph / 48571 FlyBaseID:FBgn0011224 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_009303446.1 Gene:ptbp3 / 798982 ZFINID:ZDB-GENE-091116-1 Length:522 Species:Danio rerio


Alignment Length:573 Identity:296/573 - (51%)
Similarity:366/573 - (63%) Gaps:67/573 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   337 PASDNNNQDLATKKAKLEPGTVLAGGIAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLK 401
            |::..|..|....|....|        ...|:|:|:|.:|.|..||:|::||:|||:|||:|:||
Zfish     6 PSTTANGTDSKQYKGDRSP--------CAPSRVLHVRKVPIEVSEAEVVSLGVPFGKVTNLLMLK 62

  Fly   402 GKNQAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPA 466
            ||||||||||.|.:|.:||:.||...|.:|.:.||:|:|||||||||.                 
Zfish    63 GKNQAFIEMASEEAAMTMVNYYTTATPHVRNQPVYIQYSNHRELKTDN----------------- 110

  Fly   467 SGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVS 531
                ||....|.|.....|:....|.:   |..|:..:.||   ...|.:.|||:|||:|.||||
Zfish   111 ----LPNQGRAQAALQAVNAVHTGNMS---LSGTATASDGG---MMPGQSPVLRIIVENLYYPVS 165

  Fly   532 LDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLT 596
            |::|||||.::|.||||:||||||.||||:||.|..:|.|||..||||||||||||||::.||||
Zfish   166 LEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMNAHHAKVALDGQNIYNGCCTLRVEFSKLT 230

  Fly   597 ALNVKYNNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSVNGLGAPGVLPP 661
            :||||||||||||||...||.|    |..||....|.|                 ..||||::..
Zfish   231 SLNVKYNNDKSRDFTRLDLPSG----DGQPTLDPTMQT-----------------AFGAPGIISS 274

  Fly   662 -------FALGLGTPLTGGYNNALPN----LAAFSLANSGALQTTAPAMRGYSNVLLVSNLNEEM 715
                   ||..:|.|..|....|:|.    |...|.|.:|.:...........:||||||||.:.
Zfish   275 PYPGAAGFAPAIGFPQAGLSMQAMPGALGPLTIPSSAMTGRMAIHGMTPTAIHSVLLVSNLNPDS 339

  Fly   716 VTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQA 780
            ::|..||.||||||||.|||||:|||::||||||:..||.||||||:..||:||.|||..||||.
Zfish   340 ISPHELFILFGVYGDVHRVKILFNKKENALIQMADATQAQLAMSHLNGQRLYGKVIRVTISKHQT 404

  Fly   781 VQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNS 845
            ||||:|||.|.|||:|:|.:||||||||||||:|||:||||||||||||.|.::|.:|:.|.|:.
Zfish   405 VQLPREGQEDQGLTKDFSGSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSTTDDFLKDLFASSG 469

  Fly   846 FEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI 898
            :.|||||||.|||||||:||.|||||:.|||.:|||.|.|::|||||||||.|
Zfish   470 YTVKAFKFFQKDRKMALIQLGSVEEAIQALIHLHNHDLGENHHLRVSFSKSTI 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hephNP_001247399.1 hnRNP-L_PTB 366..898 CDD:273733 290/542 (54%)
RRM1_PTBP1_like 368..448 CDD:241132 47/79 (59%)
RRM2_PTBP1_like 516..611 CDD:241137 69/94 (73%)
RRM3_PTBP1_like 705..778 CDD:240869 49/72 (68%)
RRM4_PTBP1_like 822..897 CDD:240871 50/74 (68%)
ptbp3XP_009303446.1 hnRNP-L_PTB 27..522 CDD:273733 290/542 (54%)
RRM1_PTBP1_like 29..109 CDD:241132 47/79 (59%)
RRM2_ROD1 148..250 CDD:241228 72/101 (71%)
RRM_SF 329..421 CDD:302621 63/91 (69%)
RRM_SF 442..522 CDD:302621 55/79 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 140 1.000 Domainoid score I4697
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 527 1.000 Inparanoid score I1195
OMA 1 1.010 - - QHG58575
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 1 1.000 - - FOG0001151
OrthoInspector 1 1.000 - - otm25002
orthoMCL 1 0.900 - - OOG6_101075
Panther 1 1.100 - - O PTHR15592
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4107
SonicParanoid 1 1.000 - - X703
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1313.010

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