DRSC/TRiP Functional Genomics Resources

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Protein Alignment heph and Rbm20

DIOPT Version :10

Sequence 1:NP_001247399.1 Gene:heph / 48571 FlyBaseID:FBgn0011224 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_001164318.1 Gene:Rbm20 / 73713 MGIID:1920963 Length:1199 Species:Mus musculus


Alignment Length:667 Identity:150/667 - (22%)
Similarity:214/667 - (32%) Gaps:235/667 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PIPMPMPISS-----------LHKSEFEPVNIGVKQMQLLHAPASTHPHPHPHQHPQHSAASAAA 58
            |.|.|.|.:|           |.||.|...|    |..||.:|||.                   
Mouse    46 PPPPPQPQASLPQIIQNAAKLLDKSPFSVNN----QNPLLTSPASV------------------- 87

  Fly    59 YQAMQVHQQ---QHQQQQQAAVFHHQVAAIAAQQQQQQQQAQVQHQQQMQQQFHYQAQAQAQAQA 120
             |..|:..|   ...:..|.||.::..||....        ||..:..|.|..            
Mouse    88 -QLAQIQAQLTLHRLKMAQTAVTNNTAAATVLN--------QVLSKVAMSQPL------------ 131

  Fly   121 MLQTYMQLQVNSAVGVSTAPATPTKPVAAQIPG--------AISGP--IAGPVP-VSVPTQFFTA 174
                :.||:..|.:|.:..| |.....||.:|.        |.|.|  ..||.| ||:|:|...|
Mouse   132 ----FNQLRHPSVLGTAHGP-TGVSQHAASVPSAHFPSTAIAFSPPSQTGGPGPSVSLPSQPPNA 191

  Fly   175 ----------PSTPLTIIPAAAVASSAMFATAAT--------------------------PTSAA 203
                      |.||..  ||..::......|.||                          |.||:
Mouse   192 MVVHTFSGVVPQTPAQ--PAVILSLGKAGPTPATTGFYDYGKANSGQAYGSETEGQPGFLPASAS 254

  Fly   204 TTPTNNVNNTVNLSAVSRTTTTTTKKQ---PQA----VADAVLSAVGGNVGTAVGG---GTISS- 257
            .|.:.::....:.|...:.......|.   |.|    :|....:...|::...|||   ||.|. 
Mouse   255 ATASGSMTYEGHYSHTGQDGQPAFSKDFYGPNAQGPHIAGGFPADQTGSMKGDVGGLLQGTNSQW 319

  Fly   258 --------------LLGPE---PLPIMPHHL-------------PLASVRGCSSASSGCSSASSD 292
                          ..||.   |....|:.|             ...|....|....|||...:.
Mouse   320 ERPPGFSGQNKPDITAGPSLWAPPASQPYELYDPEEPTSDRAPPAFGSRLNNSKQGFGCSCRRTK 384

  Fly   293 ------------------------------CSMPSPT-------SLHLSSPKKVRIDEQYIYK-- 318
                                          ||:....       .||:..  |:...:..::.  
Mouse   385 EGQAVLSVRPLQGHQLNDFRGLAPLHLPHICSICDKKVFDLKDWELHVKG--KLHAQKCLLFSES 447

  Fly   319 --LNYLRGSDE--LLSQAAVMAPASDNNNQD----LATKKAKL---------------EPGTVLA 360
              |..:|.|.|  |.:.|...|..:...|:|    |.|..|.:               ..||..|
Mouse   448 AGLRSIRASGEGTLSASANSTAVYNPTGNEDYTSNLGTSYAAIPTRAFAQSNPVFPSASSGTSFA 512

  Fly   361 GGIAKASKVIHLRNIPNES-GEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYT 424
            .....|.:|:|:.|:|..| .|.|||.||:|||:|||.:::|..||||:|||...:|.:||..|.
Mouse   513 AQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQ 577

  Fly   425 VTPPQMRGRMVYVQFS-NHRELKTDQGHNNSTA-----HSD-----------YSVQSPASGSPLP 472
            ..|..:.|..:.::.| .::||:..:...|..|     ||.           |..:.|.|.||:.
Mouse   578 EKPAIINGEKLLIRMSTRYKELQLKKPGKNVAAIIQDIHSQRERDMLREADRYGPERPRSRSPMS 642

  Fly   473 LSAAANATSNNANSSSD 489
            .|.:..:.|....|.:|
Mouse   643 RSLSPRSHSPPGPSRAD 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hephNP_001247399.1 hnRNP-L_PTB 366..898 CDD:273733 48/142 (34%)
Rbm20NP_001164318.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..55 4/8 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..186 8/22 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 320..346 3/25 (12%)
RRM_RBM20 520..595 CDD:410086 32/74 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 626..685 9/34 (26%)
RS. /evidence=ECO:0000250|UniProtKB:Q5T481 630..649 6/18 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 720..884
MDN1 <771..1076 CDD:444083
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 944..1077
ZnF_U1 1131..1165 CDD:197732
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1172..1199
Blue background indicates that the domain is not in the aligned region.

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