DRSC/TRiP Functional Genomics Resources

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Protein Alignment heph and PTBP1

DIOPT Version :9

Sequence 1:NP_001247399.1 Gene:heph / 48571 FlyBaseID:FBgn0011224 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_005259654.1 Gene:PTBP1 / 5725 HGNCID:9583 Length:559 Species:Homo sapiens


Alignment Length:604 Identity:326/604 - (53%)
Similarity:396/604 - (65%) Gaps:88/604 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 RGSDELLSQAAVMAP-------ASDNNNQDLATKKAKLEPGTVLAGGIAKASKVIHLRNIPNESG 380
            ||||||.|......|       ||..|..|  :||.|   |...:.|:  .|:|||:|.:|.:..
Human    16 RGSDELFSTCVTNGPFIMSSNSASAANGND--SKKFK---GDSRSAGV--PSRVIHIRKLPIDVT 73

  Fly   381 EADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHREL 445
            |.:||:||:|||:|||:|:|||||||||||..|.:|.:||:.||...|.:||:.:|:|||||:||
Human    74 EGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 138

  Fly   446 KTDQGHNNSTAHSD-YSVQSPASGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNT 509
            |||...|.:.|.:. .:|.|..||:   |:.||:|                     :||:||   
Human   139 KTDSSPNQARAQAALQAVNSVQSGN---LALAASA---------------------AAVDAG--- 176

  Fly   510 NAAGGPNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKS 574
            .|..|.:.|||:|||:|.|||:||:|||||.::|.||||:||||||.||||:||.|..||||||.
Human   177 MAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 241

  Fly   575 LLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLL 639
            .||||||||.|||||||.||||:||||||||||||:|.|.||.|    |..|:.       |..:
Human   242 SLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSG----DSQPSL-------DQTM 295

  Fly   640 IAARQRPSLSVNGLGAPGVL--PPFALGLGTPLTGGYNNALPNLAAFSLAN-SGALQTTA----- 696
            .||          .||||::  .|:| |.|.|.|    .|:|..|..|:.| .|||...|     
Human   296 AAA----------FGAPGIISASPYA-GAGFPPT----FAIPQAAGLSVPNVHGALAPLAIPSAA 345

  Fly   697 -----------PAMRGYSN-VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMA 749
                       |.:.|..| ||||||||.|.|||.:||.||||||||||||||:|||::||:|||
Human   346 AAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMA 410

  Fly   750 EPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQ 814
            :..||.||||||:..:|.|||||:..||||.||||:|||.|.|||:||..:||||||||||||:|
Human   411 DGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQ 475

  Fly   815 NIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMH 879
            ||:||||||||||||.|.||:|:|..|:||...||.||||.|||||||:|:.||||||.|||.:|
Human   476 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLH 540

  Fly   880 NHQLSESNHLRVSFSKSNI 898
            ||.|.|::|||||||||.|
Human   541 NHDLGENHHLRVSFSKSTI 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hephNP_001247399.1 hnRNP-L_PTB 366..898 CDD:273733 308/552 (56%)
RRM1_PTBP1_like 368..448 CDD:241132 46/79 (58%)
RRM2_PTBP1_like 516..611 CDD:241137 72/94 (77%)
RRM3_PTBP1_like 705..778 CDD:240869 51/72 (71%)
RRM4_PTBP1_like 822..897 CDD:240871 52/74 (70%)
PTBP1XP_005259654.1 hnRNP-L_PTB 59..559 CDD:273733 308/552 (56%)
RRM1_PTBP1 61..141 CDD:241221 46/79 (58%)
RRM2_PTBP1_like 183..278 CDD:241137 72/94 (77%)
RRM3_PTBP1 366..458 CDD:241139 65/91 (71%)
RRM_SF 479..559 CDD:302621 57/79 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 140 1.000 Domainoid score I4752
eggNOG 1 0.900 - - E1_KOG1190
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H49188
Inparanoid 1 1.050 545 1.000 Inparanoid score I1164
Isobase 1 0.950 - 0 Normalized mean entropy S2018
OMA 1 1.010 - - QHG58575
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 1 1.000 - - FOG0001151
OrthoInspector 1 1.000 - - otm41607
orthoMCL 1 0.900 - - OOG6_101075
Panther 1 1.100 - - LDO PTHR15592
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4107
SonicParanoid 1 1.000 - - X703
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.820

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