DRSC/TRiP Functional Genomics Resources

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Protein Alignment heph and Matr3

DIOPT Version :10

Sequence 1:NP_001247399.1 Gene:heph / 48571 FlyBaseID:FBgn0011224 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_063133245.1 Gene:Matr3 / 29150 RGDID:3052 Length:865 Species:Rattus norvegicus


Alignment Length:503 Identity:105/503 - (20%)
Similarity:176/503 - (34%) Gaps:167/503 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 AVG--GNVGTAVGGGTISSLLGP---------------------------------EPLPIMPHH 270
            |||  ||:|...|     :|.||                                 ||..::.:|
  Rat   369 AVGPRGNLGAGNG-----NLQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNH 428

  Fly   271 LPLASVRGC--SSASSGCSSASSDCSMPSPTSLHLSSPKKVRIDEQYIYKLNYLRGS-DELLSQA 332
            |.|..:...  ..|::..:.|:.|....:| :|....|.:|.:.::| .::....|. |:...| 
  Rat   429 LILNKINEAFIEMATTEDAQAAVDYYTTTP-ALVFGKPVRVHLSQKY-KRIKKPEGKPDQKFDQ- 490

  Fly   333 AVMAPASDNNNQDLATKKAKLEPGTVLAGGIAKASKVIHLRNIPNESGEAD--VIALGIPFGRVT 395
                      .|:|                    .:||||.|:|: ||.:|  |:.|..|:|::.
  Rat   491 ----------KQEL--------------------GRVIHLSNLPH-SGYSDSAVLKLAEPYGKIK 524

  Fly   396 NVLVLKGKNQAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRE-------------LKT 447
            |.::::.|:||||||.....|.:||..........:||.|.|..|...:             ||.
  Rat   525 NYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNRGIDLLKK 589

  Fly   448 DQGHNNS------TAHSD--------YSVQSPASGSPLPLSAAANATSNNANSSS---------- 488
            |:....|      .:.||        ...::||.|......:..:...:..:..:          
  Rat   590 DKSRKRSYSPDGKESPSDKKSKTDGAQKTENPAEGKEQEEKSGEDGEKDTKDDQTEQEPSMLLES 654

  Fly   489 ------DSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRYGKVLK 547
                  |...|..:|::.|:|  |..|:.|...:.......|.....|..|......::..||.|
  Rat   655 EDELLVDEEEAAALLESGSSV--GDETDLANLGDVSSDGKKEPSDKAVKKDASATSKKKLKKVDK 717

  Fly   548 IVTFTKNNSFQALIQ---------YPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYN 603
            |....:.|  :|.::         .|.|.||::|.                 |.:|..:.|....
  Rat   718 IEELDQEN--EAALENGIKNEENTEPGAESAENAD-----------------DPNKDASDNSDGQ 763

  Fly   604 NDKSR-DFTNP---ALPPGEP----GVD-IMPTAG------GLMNTND 636
            ||::: |:|.|   .:.|.:|    |:| ::|..|      .|..||:
  Rat   764 NDENKEDYTIPDEYRIGPYQPNVPVGIDYVIPKTGFYCKLCSLFYTNE 811

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hephNP_001247399.1 hnRNP-L_PTB 366..898 CDD:273733 77/340 (23%)
Matr3XP_063133245.1 None

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