DRSC/TRiP Functional Genomics Resources

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Protein Alignment heph and Ptbp1

DIOPT Version :9

Sequence 1:NP_001247399.1 Gene:heph / 48571 FlyBaseID:FBgn0011224 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_001070831.1 Gene:Ptbp1 / 19205 MGIID:97791 Length:555 Species:Mus musculus


Alignment Length:602 Identity:325/602 - (53%)
Similarity:398/602 - (66%) Gaps:86/602 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 RGSDELLSQAAVMAP------ASDNNNQDLATKKAKLEPGTVLAGGIAKASKVIHLRNIPNESGE 381
            ||||||.|......|      ||..|..|  :||.|   |...:.|:  .|:|||:|.:|::..|
Mouse    14 RGSDELFSTCVSNGPFIMSSSASAANGND--SKKFK---GDNRSAGV--PSRVIHVRKLPSDVTE 71

  Fly   382 ADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRELK 446
            .:||:||:|||:|||:|:|||||||||||..|.:|.:||:.||...|.:||:.:|:|||||:|||
Mouse    72 GEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELK 136

  Fly   447 TDQGHNNSTAHSD-YSVQSPASGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTN 510
            ||...|.:.|.:. .:|.|..||:   |:.||:|                     :||:||   .
Mouse   137 TDSSPNQARAQAALQAVNSVQSGN---LALAASA---------------------AAVDAG---M 174

  Fly   511 AAGGPNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSL 575
            |..|.:.|||:|||:|.|||:||:|||||.::|.||||:||||||.||||:||.|..||||||..
Mouse   175 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 239

  Fly   576 LDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLI 640
            ||||||||.|||||||.||||:||||||||||||:|.|.||.|    |..|:.       |..:.
Mouse   240 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSG----DSQPSL-------DQTMA 293

  Fly   641 AARQRPSLSVNGLGAPGVL--PPFALGLGTPLTGGYNNALPNLAAFSLAN-SGALQTTA------ 696
            ||          .||||::  .|:| |.|.|.|    .|:|..|..|:.| .|||...|      
Mouse   294 AA----------FGAPGIMSASPYA-GAGFPPT----FAIPQAAGLSVPNVHGALAPLAIPSAAA 343

  Fly   697 ---------PAMRGYSN-VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEP 751
                     |.:.|..| ||||||||.|.|||.:||.||||||||||||||:|||::||:|||:.
Mouse   344 AAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 408

  Fly   752 QQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNI 816
            .||.||||||:..:|.||.:|:..||||:||||:|||.|.|||:||..:||||||||||||:|||
Mouse   409 SQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNI 473

  Fly   817 YPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNH 881
            :||||||||||||.|.||||:|..|:||...||.||||.|||||||:|:.||||||.|||::|||
Mouse   474 FPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNH 538

  Fly   882 QLSESNHLRVSFSKSNI 898
            .|.|::|||||||||.|
Mouse   539 DLGENHHLRVSFSKSTI 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hephNP_001247399.1 hnRNP-L_PTB 366..898 CDD:273733 307/551 (56%)
RRM1_PTBP1_like 368..448 CDD:241132 46/79 (58%)
RRM2_PTBP1_like 516..611 CDD:241137 72/94 (77%)
RRM3_PTBP1_like 705..778 CDD:240869 49/72 (68%)
RRM4_PTBP1_like 822..897 CDD:240871 53/74 (72%)
Ptbp1NP_001070831.1 hnRNP-L_PTB 56..555 CDD:273733 307/551 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 123 1.000 Domainoid score I5560
eggNOG 1 0.900 - - E1_KOG1190
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H49188
Inparanoid 1 1.050 521 1.000 Inparanoid score I1252
Isobase 1 0.950 - 0 Normalized mean entropy S2018
OMA 1 1.010 - - QHG58575
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 1 1.000 - - FOG0001151
OrthoInspector 1 1.000 - - otm43656
orthoMCL 1 0.900 - - OOG6_101075
Panther 1 1.100 - - LDO PTHR15592
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4107
SonicParanoid 1 1.000 - - X703
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.820

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