DRSC/TRiP Functional Genomics Resources

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Protein Alignment heph and hnrnpll

DIOPT Version :9

Sequence 1:NP_001247399.1 Gene:heph / 48571 FlyBaseID:FBgn0011224 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_001120904.1 Gene:hnrnpll / 100151733 XenbaseID:XB-GENE-492379 Length:531 Species:Xenopus tropicalis


Alignment Length:559 Identity:143/559 - (25%)
Similarity:247/559 - (44%) Gaps:121/559 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   367 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVTPPQMR 431
            |.|:|:|.:.....|||::.....||.:..|:::..|.||.:|..|...:...|:.....|..:.
 Frog    64 SPVVHVRGLCESVVEADLVEALTKFGPICYVMMMPFKRQALVEFEDIEFSKKCVAFAASEPVYIA 128

  Fly   432 GRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANSSSDSNSAMGI 496
            |:..:..:|..:.                 :..||               ||.:.|         
 Frog   129 GQQAFFNYSTSKR-----------------ITRPA---------------NNEDPS--------- 152

  Fly   497 LQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALI 561
                             |.|.||.:.:::.:||:::|:|:.:....|||.:||.| |.|..||::
 Frog   153 -----------------GGNKVLLLSIQNPLYPITVDVLYSVCNPVGKVERIVIF-KRNGIQAMV 199

  Fly   562 QYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVDIMP 626
            ::...:|||.|||.|:|.:||.|||||:|:.::.|.|||..|::.|.|::.|.|...:.|     
 Frog   200 EFDSVHSAQKAKSSLNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYSKPYLSRRDRG----- 259

  Fly   627 TAGGLMNTNDLLLIAARQR--------PSLSVNGLGAPGVLPP----FALGLGTPLTGGYNNALP 679
                          ..|||        .|...:|.|..|.|.|    :.:|         :...|
 Frog   260 --------------KGRQRQAILGDHPSSYRYDGYGNHGPLLPLPNLYRMG---------SRDTP 301

  Fly   680 NLAAFSLANSGALQTTAPAMRG---YSNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKK 741
            .|.|:.|.     |.::..|.|   ..:|.:||.|:::.:....:|.||.:||::::||.:....
 Frog   302 ELVAYPLP-----QASSSYMHGGPPVGSVAMVSGLHQQKMNCSRVFNLFCLYGNIEKVKFMKTIP 361

  Fly   742 DSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPK---EGQPDAGLTRDYSQNPLH 803
            .:||::|.:......|::||:.::|:||.:.|..||..:| :|.   |.:......:|::.:..:
 Frog   362 GTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSV-VPSQIFELEDGTSSYKDFAMSKNN 425

  Fly   804 RFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAF----TSNSFEVKAFKFFPKDRKMA-LL 863
            ||...|..:...|.|||..||..|:|.|..|:..::..    .|...:.|.|...|..:.:: ||
 Frog   426 RFTSAGQASKNIIQPPSCVLHYYNVPLSVEEEMFQKLCEDHEVSTFIKFKVFDAKPSSKTLSGLL 490

  Fly   864 QLLSVEEAVLALIKMHNHQLSESN-----HLRVSFSKSN 897
            :..|..|||.||..::::|:...|     .|::.||.|:
 Frog   491 EWESKTEAVEALTVLNHYQIRVPNGSNPYTLKLCFSTSS 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hephNP_001247399.1 hnRNP-L_PTB 366..898 CDD:273733 143/559 (26%)
RRM1_PTBP1_like 368..448 CDD:241132 18/79 (23%)
RRM2_PTBP1_like 516..611 CDD:241137 40/94 (43%)
RRM3_PTBP1_like 705..778 CDD:240869 22/72 (31%)
RRM4_PTBP1_like 822..897 CDD:240871 23/84 (27%)
hnrnpllNP_001120904.1 hnRNP-L_PTB 63..530 CDD:273733 143/559 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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