DRSC/TRiP Functional Genomics Resources

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Protein Alignment NOVA1 and mub

DIOPT Version :10

Sequence 1:NP_002506.2 Gene:NOVA1 / 4857 HGNCID:7886 Length:507 Species:Homo sapiens
Sequence 2:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster


Alignment Length:485 Identity:118/485 - (24%)
Similarity:186/485 - (38%) Gaps:150/485 - (30%)


- Green bases have known domain annotations that are detailed below.


Human    52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFI 116
            :::::.....||||||.|:.:.:.::|:||.|.:|..     ...||:..:.||..|:.:....|
  Fly    26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG-----SCPERIVTVSGTTNAIFSAFTLI 85

Human   117 AEKIREMPQ------NVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVK 175
            .:|..|...      .|.||:                   :|                     ::
  Fly    86 TKKFEEWCSQFNDVGKVGKTQ-------------------IP---------------------IR 110

Human   176 IIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK--PDGINLQERVVTVSGEPEQNRKAVELII 238
            :|||.|..|.:|||.|:.:|.:.:.:|..:|::.:  |   |..||.||:||..||..:.:..|.
  Fly   111 LIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQIC 172

Human   239 QKIQEDPQSGSCLNISY---ANVTGPVANSNPT--------GSPYANTAEVLPTAAAAAGLLGHA 292
            ..:.|.|..|:  .|.|   ..|||||..:|..        ..|...|..|.|.|.|..||  ||
  Fly   173 LVMLESPPRGA--TIPYRPKPQVTGPVILANGQAFTIQGNYAVPTQETCPVFPLALATGGL--HA 233

Human   293 NLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAA--------AA 349
            .::|:|  ..:|.|                                |...||:.|        ..
  Fly   234 GISGLA--DPLLKG--------------------------------AHLQGAIPAHHHHLQQMPD 264

Human   350 ASANPAAAAANLLATYASEASASGSTAGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTE 414
            .:.||.|:.|                        |||......|:|.|....|:|          
  Fly   265 VAKNPLASLA------------------------ALGLAGMNPASTGGINHTANP---------- 295

Human   415 KSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPA 479
             :....:...|:.|..:|:|.|:||||..:.|.::::||.|:||...|...|..:|.:||:|.|.
  Fly   296 -ANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPD 359

Human   480 ATQAAQYLITQRITYEQG--VRAANPQKVG 507
            :...|||||...:..::.  :..|..|:.|
  Fly   360 SVALAQYLINMSVELQKANLLEQAQSQQNG 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NOVA1NP_002506.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..44
Bipartite nuclear localization signal. /evidence=ECO:0000255 27..43
KH-I_NOVA_rpt1 49..121 CDD:411863 19/68 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 139..171 1/31 (3%)
KH-I_NOVA_rpt2 172..241 CDD:411864 23/70 (33%)
Required for RNA binding. /evidence=ECO:0000269|PubMed:10811881 419..503 28/85 (33%)
KH-I_NOVA_rpt3 422..492 CDD:411807 27/69 (39%)
mubNP_001246875.1 KH-I_PCBP_rpt1 26..92 CDD:411866 19/70 (27%)
KH-I_PCBP_rpt2 107..177 CDD:411806 24/93 (26%)
KH-I_PCBP_rpt3 301..371 CDD:411867 27/69 (39%)
Blue background indicates that the domain is not in the aligned region.

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