DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sam-S and SAM1

DIOPT Version :9

Sequence 1:NP_524923.1 Gene:Sam-S / 48552 FlyBaseID:FBgn0005278 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_171751.1 Gene:SAM1 / 839501 AraportID:AT1G02500 Length:393 Species:Arabidopsis thaliana


Alignment Length:387 Identity:223/387 - (57%)
Similarity:283/387 - (73%) Gaps:7/387 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 TFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQK 92
            |||||||||.||||||:|||||||:|||.|:|||::||||||..||.|:::.||||:||.|||:|
plant     3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEK 67

  Fly    93 VVRETVQHIGYDDSSKGFDWKTLNLLVAIEQQSPNIANGV--HINREEEDVGAGDQGIMFGYATD 155
            :||:|.:.||:.....|.|.....:||.||||||:||.||  |..:..|::||||||.|||||||
plant    68 IVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKCPEEIGAGDQGHMFGYATD 132

  Fly   156 ETEECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYLFNQGSAVPKRVHTIVVSMQH 220
            ||.|.|||:.|||.||..::.|:|::....|.|||.|||||.||..::|:.||.||||:::|.||
plant   133 ETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDKGAMVPIRVHTVLISTQH 197

  Fly   221 SEKISLETLRSEVMEKVVKVVIPAKYIDANTIVHINPCGLFVIGGPMGDAGLTGRKIIVDTYGGW 285
            .|.::.:.:..::.|.|:|.|||.||:|..||.|:||.|.||||||.|||||||||||:||||||
plant   198 DETVTNDEIARDLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 262

  Fly   286 GAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCKRCLVQVSYAIGLAEPLSITVFDYGTSH 350
            ||||||||||||.||||||.||..|..|||:|..|:.:|.|||||||||:.||||:.|..|.|..
plant   263 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGMARRALVQVSYAIGVPEPLSVFVDTYETGL 327

  Fly   351 KSQKELLDIIRRNFDLRPGKIVKDLNLRQ---PIYQRTSTYGHFGR--AGFSWEEAKPLEID 407
            ...||:|.|::.:||.|||.:..:|:|::   ..:.:|:.||||||  ..|:||..|||:.|
plant   328 IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sam-SNP_524923.1 PTZ00104 28..408 CDD:240268 223/387 (58%)
S-AdoMet_synt_N 28..125 CDD:278846 60/96 (63%)
S-AdoMet_synt_M 140..261 CDD:280867 63/120 (53%)
S-AdoMet_synt_C 263..399 CDD:280868 83/140 (59%)
SAM1NP_171751.1 PLN02243 1..386 CDD:177886 220/382 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 176 1.000 Domainoid score I1084
eggNOG 1 0.900 - - E1_COG0192
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 456 1.000 Inparanoid score I376
OMA 1 1.010 - - QHG61243
OrthoDB 1 1.010 - - D685006at2759
OrthoFinder 1 1.000 - - FOG0000746
OrthoInspector 1 1.000 - - otm3357
orthoMCL 1 0.900 - - OOG6_100388
Panther 1 1.100 - - O PTHR11964
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X478
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

Return to query results.
Submit another query.