DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sam-S and SAM-2

DIOPT Version :9

Sequence 1:NP_524923.1 Gene:Sam-S / 48552 FlyBaseID:FBgn0005278 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_001078345.1 Gene:SAM-2 / 826987 AraportID:AT4G01850 Length:393 Species:Arabidopsis thaliana


Alignment Length:387 Identity:223/387 - (57%)
Similarity:283/387 - (73%) Gaps:7/387 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 TFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQK 92
            |||||||||.||||||:|||||||:|||.|:|||::||||||..||.|:::.||||:||.:||:|
plant     3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATIDYEK 67

  Fly    93 VVRETVQHIGYDDSSKGFDWKTLNLLVAIEQQSPNIANGV--HINREEEDVGAGDQGIMFGYATD 155
            :||:|.:.||:.....|.|.....:||.||||||:||.||  |..:..||:||||||.|||||||
plant    68 IVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATD 132

  Fly   156 ETEECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYLFNQGSAVPKRVHTIVVSMQH 220
            ||.|.|||:.|||.|:..::.|:|::....|.|||.|||||.||..:.|:.||.||||:::|.||
plant   133 ETPELMPLSHVLATKIGARLTEVRKNGTCRWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH 197

  Fly   221 SEKISLETLRSEVMEKVVKVVIPAKYIDANTIVHINPCGLFVIGGPMGDAGLTGRKIIVDTYGGW 285
            .|.::.:.:..::.|.|:|.:||.||:|..||.|:||.|.||||||.|||||||||||:||||||
plant   198 DETVTNDEIARDLKEHVIKPIIPEKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGW 262

  Fly   286 GAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCKRCLVQVSYAIGLAEPLSITVFDYGTSH 350
            ||||||||||||.||||||.||..|..|||:|..|:.:|.|||||||||:.||||:.|..|||..
plant   263 GAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGMARRALVQVSYAIGVPEPLSVFVDTYGTGL 327

  Fly   351 KSQKELLDIIRRNFDLRPGKIVKDLNLRQ---PIYQRTSTYGHFGR--AGFSWEEAKPLEID 407
            ...||:|.|::..||.|||.:..:|:|::   ..:|:|:.||||||  ..|:||..|||:.|
plant   328 IPDKEILKIVKETFDFRPGMMTINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPLKWD 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sam-SNP_524923.1 PTZ00104 28..408 CDD:240268 223/387 (58%)
S-AdoMet_synt_N 28..125 CDD:278846 59/96 (61%)
S-AdoMet_synt_M 140..261 CDD:280867 62/120 (52%)
S-AdoMet_synt_C 263..399 CDD:280868 85/140 (61%)
SAM-2NP_001078345.1 PLN02243 1..386 CDD:177886 220/382 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 176 1.000 Domainoid score I1084
eggNOG 1 0.900 - - E1_COG0192
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 456 1.000 Inparanoid score I376
OMA 1 1.010 - - QHG61243
OrthoDB 1 1.010 - - D685006at2759
OrthoFinder 1 1.000 - - FOG0000746
OrthoInspector 1 1.000 - - otm3357
orthoMCL 1 0.900 - - OOG6_100388
Panther 1 1.100 - - O PTHR11964
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X478
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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