DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sam-S and sams-4

DIOPT Version :9

Sequence 1:NP_524923.1 Gene:Sam-S / 48552 FlyBaseID:FBgn0005278 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_500871.1 Gene:sams-4 / 177354 WormBaseID:WBGene00015540 Length:404 Species:Caenorhabditis elegans


Alignment Length:378 Identity:277/378 - (73%)
Similarity:323/378 - (85%) Gaps:0/378 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 FLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKV 93
            ||||||||.||||||||||||||:|||||.|||:||||||||.|||||:||||||||||||||.:
 Worm     6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVVDYQVL 70

  Fly    94 VRETVQHIGYDDSSKGFDWKTLNLLVAIEQQSPNIANGVHINREEEDVGAGDQGIMFGYATDETE 158
            ||..::.|||||||||||:||.|:|||:|||||.||.|||::::.:|||||||||||||||||||
 Worm    71 VRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHVDKDSDDVGAGDQGIMFGYATDETE 135

  Fly   159 ECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYLFNQGSAVPKRVHTIVVSMQHSEK 223
            |.||||::|:||||.|:.|||||....|.|||||||||.||....|:.||.||||:|:|.|||..
 Worm   136 EAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPD 200

  Fly   224 ISLETLRSEVMEKVVKVVIPAKYIDANTIVHINPCGLFVIGGPMGDAGLTGRKIIVDTYGGWGAH 288
            |||:.||.|::|||:|.||||..||..||.|:||||.|:||||||||||||||||||||||||||
 Worm   201 ISLDDLRKELIEKVIKAVIPANLIDDKTIYHLNPCGSFIIGGPMGDAGLTGRKIIVDTYGGWGAH 265

  Fly   289 GGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCKRCLVQVSYAIGLAEPLSITVFDYGTSHKSQ 353
            |||||||||.||||||||||||||||||||||||:|||||||||||:|:|||:.||.:|||..|:
 Worm   266 GGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAKPLSVMVFSFGTSALSE 330

  Fly   354 KELLDIIRRNFDLRPGKIVKDLNLRQPIYQRTSTYGHFGRAGFSWEEAKPLEI 406
            ::||.|:..|||||||||:|:|:|::|||:.|:..||||...|.||:.:.|:|
 Worm   331 EDLLTIVNDNFDLRPGKIIKNLDLKRPIYEPTAENGHFGHNNFPWEQPRNLKI 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sam-SNP_524923.1 PTZ00104 28..408 CDD:240268 277/378 (73%)
S-AdoMet_synt_N 28..125 CDD:278846 78/95 (82%)
S-AdoMet_synt_M 140..261 CDD:280867 82/120 (68%)
S-AdoMet_synt_C 263..399 CDD:280868 104/135 (77%)
sams-4NP_500871.1 PTZ00104 1..386 CDD:240268 277/378 (73%)
S-AdoMet_synt_N 5..102 CDD:278846 78/95 (82%)
S-AdoMet_synt_M 117..238 CDD:280867 82/120 (68%)
S-AdoMet_synt_C 240..376 CDD:280868 104/135 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159448
Domainoid 1 1.000 226 1.000 Domainoid score I1432
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H38112
Inparanoid 1 1.050 583 1.000 Inparanoid score I550
Isobase 1 0.950 - 0 Normalized mean entropy S107
OMA 1 1.010 - - QHG61243
OrthoDB 1 1.010 - - D357186at33208
OrthoFinder 1 1.000 - - FOG0000746
OrthoInspector 1 1.000 - - otm14149
orthoMCL 1 0.900 - - OOG6_100388
Panther 1 1.100 - - O PTHR11964
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R708
SonicParanoid 1 1.000 - - X478
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.890

Return to query results.
Submit another query.