DRSC/TRiP Functional Genomics Resources

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Protein Alignment NOTCH4 and lin-12

DIOPT Version :10

Sequence 1:NP_004548.3 Gene:NOTCH4 / 4855 HGNCID:7884 Length:2003 Species:Homo sapiens
Sequence 2:NP_499007.1 Gene:lin-12 / 176282 WormBaseID:WBGene00003001 Length:1429 Species:Caenorhabditis elegans


Alignment Length:27 Identity:8/27 - (29%)
Similarity:12/27 - (44%) Gaps:0/27 - (0%)


- Green bases have known domain annotations that are detailed below.


Human    23 LGGGQKASLSRSEEFLTRISTELTDEA 49
            :|...|..||.:...|..:.|.|.:.|
 Worm   286 VGSLNKIPLSIAGIVLFNVPTSLQNSA 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NOTCH4NP_004548.3 EGF_CA 194..225 CDD:429571
EGF 280..308 CDD:394967
EGF_CA 314..353 CDD:238011
EGF_CA <364..390 CDD:238011
EGF_CA 432..473 CDD:238011
EGF_CA 475..511 CDD:238011
EGF_CA 515..549 CDD:238011
EGF_CA 551..587 CDD:238011
EGF_CA 590..625 CDD:238011
EGF_CA <699..726 CDD:238011
EGF_CA <736..765 CDD:238011
EGF_CA 769..803 CDD:238011
EGF_CA <813..842 CDD:238011
EGF_CA <899..928 CDD:238011
EGF_CA 931..965 CDD:238011
EGF_CA 970..1004 CDD:238011
EGF_CA 1047..1084 CDD:238011
Notch 1168..1204 CDD:459658
LNR 1 1170..1213
Notch 1211..1246 CDD:459658
LNR 2 1214..1250
Notch 1249..1285 CDD:459658
LNR 3 1251..1294
NOD 1295..1344 CDD:462014
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1347..1371
NODP 1379..>1420 CDD:462229
JMTM_Notch4 1431..1515 CDD:411988
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1485..1508
ANK repeat 1586..1630 CDD:293786
ANKYR <1619..1823 CDD:440430
ANK 1 1633..1665
ANK repeat 1634..1664 CDD:293786
ANK repeat 1666..1698 CDD:293786
ANK 2 1666..1698
ANK 3 1700..1732
ANK repeat 1700..1731 CDD:293786
ANK 4 1733..1765
ANK repeat 1733..1764 CDD:293786
ANK 5 1766..1798
ANK repeat 1766..1797 CDD:293786
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1900..1927
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1968..2003
lin-12NP_499007.1 EGF_CA 152..189 CDD:238011
EGF_2 220..245 CDD:400365
EGF_CA 252..285 CDD:238011
EGF_CA 293..323 CDD:238011 6/20 (30%)
EGF_CA 365..401 CDD:238011
EGF_CA 505..541 CDD:238011
EGF_CA 545..579 CDD:238011
NL 635..668 CDD:197463
Notch 675..709 CDD:459658
Notch 715..750 CDD:459658
NOD 753..807 CDD:462014
NODP 842..898 CDD:462229
ANK repeat 1052..1091 CDD:293786
ANKYR 1070..1295 CDD:440430
ANK repeat 1093..1124 CDD:293786
ANK repeat 1126..1160 CDD:293786
ANK repeat 1162..1201 CDD:293786
ANK repeat 1203..1238 CDD:293786
ANK repeat 1240..1271 CDD:293786
Blue background indicates that the domain is not in the aligned region.

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