DRSC/TRiP Functional Genomics Resources

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Protein Alignment NOTCH4 and si:ch73-281k2.5

DIOPT Version :10

Sequence 1:NP_004548.3 Gene:NOTCH4 / 4855 HGNCID:7884 Length:2003 Species:Homo sapiens
Sequence 2:XP_009302182.2 Gene:si:ch73-281k2.5 / 100002182 ZFINID:ZDB-GENE-141222-10 Length:256 Species:Danio rerio


Alignment Length:230 Identity:125/230 - (54%)
Similarity:154/230 - (66%) Gaps:4/230 - (1%)


- Green bases have known domain annotations that are detailed below.


Human   272 DCEVNPDNCVSHQCQNGGTCQDGLDTYTCLCPETWTGWDCSEDVDECETQGPPHCRNGGTCQNSA 336
            :||||.|:|::|:||||.||.||::||||.||..|||..|::|||||..| |..|:|||.|.|:.
Zfish    27 NCEVNIDDCLNHRCQNGATCMDGVNTYTCQCPPKWTGQFCTDDVDECRLQ-PNACQNGGKCSNTR 90

Human   337 GSFHCVCVSGWGGTSCEENLDDCIAATCAPGSTCIDRVGSFSCLCPPGRTGLLCHLEDMCLSQPC 401
            ..::|.||:||.|..|.||:|||....|..||||||||.||.|.||||:|||||||:|.|:|.||
Zfish    91 NGYNCECVNGWSGLDCSENIDDCAYTPCFAGSTCIDRVASFFCSCPPGKTGLLCHLDDACISNPC 155

Human   402 HGDAQCSTNPLTGSTLCLCQPGYSGPTCHQDLDECLMAQQGPSPCEHGGSCLNTPGSFNCLCPPG 466
            ...|:|.||||.|...|.|..||.|.||.:|:|||::   ||:||||||.|.||.|||.|.|..|
Zfish   156 KMGAECDTNPLNGKFYCNCPSGYKGRTCEEDIDECVI---GPNPCEHGGLCKNTEGSFTCYCASG 217

Human   467 YTGSRCEADHNECLSQPCHPGSTCLDLLATFHCLC 501
            |||.|||....:|...||...:.|...:..:.|:|
Zfish   218 YTGPRCEHKIKDCDFNPCQNDARCFVEMGNYSCMC 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NOTCH4NP_004548.3 EGF_CA 194..225 CDD:429571
EGF 280..308 CDD:394967 17/27 (63%)
EGF_CA 314..353 CDD:238011 19/38 (50%)
EGF_CA <364..390 CDD:238011 19/25 (76%)
EGF_CA 432..473 CDD:238011 25/40 (63%)
EGF_CA 475..511 CDD:238011 6/27 (22%)
EGF_CA 515..549 CDD:238011
EGF_CA 551..587 CDD:238011
EGF_CA 590..625 CDD:238011
EGF_CA <699..726 CDD:238011
EGF_CA <736..765 CDD:238011
EGF_CA 769..803 CDD:238011
EGF_CA <813..842 CDD:238011
EGF_CA <899..928 CDD:238011
EGF_CA 931..965 CDD:238011
EGF_CA 970..1004 CDD:238011
EGF_CA 1047..1084 CDD:238011
Notch 1168..1204 CDD:459658
LNR 1 1170..1213
Notch 1211..1246 CDD:459658
LNR 2 1214..1250
Notch 1249..1285 CDD:459658
LNR 3 1251..1294
NOD 1295..1344 CDD:462014
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1347..1371
NODP 1379..>1420 CDD:462229
JMTM_Notch4 1431..1515 CDD:411988
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1485..1508
ANK repeat 1586..1630 CDD:293786
ANKYR <1619..1823 CDD:440430
ANK 1 1633..1665
ANK repeat 1634..1664 CDD:293786
ANK repeat 1666..1698 CDD:293786
ANK 2 1666..1698
ANK 3 1700..1732
ANK repeat 1700..1731 CDD:293786
ANK 4 1733..1765
ANK repeat 1733..1764 CDD:293786
ANK 5 1766..1798
ANK repeat 1766..1797 CDD:293786
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1900..1927
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1968..2003
si:ch73-281k2.5XP_009302182.2 None
Blue background indicates that the domain is not in the aligned region.

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