Protein Alignment Hrb87F and PUB1

DIOPT Version :10

• Sequence 1: NP_476806.2
• Gene: Hrb87F / 48535
• FlyBaseID: FBgn0004237
• Length: 385
• Species: Drosophila melanogaster
• Sequence 2: NP_014382.1
• Gene: PUB1 / 855716
• SGDID: S000004961
• Length: 453
• Species: Saccharomyces cerevisiae
• Alignment Length: 299
• Identity: 74/299 - (24%)
• Similarity: 111/299 - (37%)
• Gaps: 78/299 - (26%)

  Fly     2 AEQNDSNGNYDD-----------GEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVV 55
            :||.:.|...:|           |.|.::    |.|::|.||...|:|.||.:|:..|.|.::.:
Yeast    46 SEQAEDNQGENDPSVVPANAITGGRETSD----RVLYVGNLDKAITEDILKQYFQVGGPIANIKI 106

  Fly    56 MKDPKTKRSRGFGFITYSQSYMIDNA-QNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFV 119
            |.| |..::..:.|:.|.||:..:.| |.....:|:...|:...|...|:..|.:    ...|||
Yeast   107 MID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDD----TFNLFV 166

  Fly   120 GGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKT 184
            |.|..:.|:|.||..||||...:|.:::.|..||..||:.|:.|...|.
Yeast   167 GDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD---------------- 215

  Fly   185 LDVKKAIAKQDMDRQGGGGGRGGP-RAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFG 248
                   |:..||...|....|.| |.              .|..:...|...|:
Yeast   216 -------AQNAMDSMQGQDLNGRPLRI--------------NWAAKRDNNNNNNY---------- 249

  Fly   249 NSGGNFGGGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWN 287
            ....|:|....||...:|.         ||....|.|.|
Yeast   250 QQRRNYGNNNRGGFRQYNS---------NNNNNMNMGMN 279

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hrb87F	NP_476806.2	RRM1_hnRNPA_like	25..102	CDD:409992	23/77 (30%)
		RRM_SF	116..188	CDD:473069	22/71 (31%)
PUB1	NP_014382.1	RRM1_PUB1	77..150	CDD:410026	22/73 (30%)
		RRM2_PUB1	161..240	CDD:410031	30/115 (26%)
		RRM3_PUB1	341..414	CDD:410033