DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and GR-RBP5

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_177563.1 Gene:GR-RBP5 / 843763 AraportID:AT1G74230 Length:289 Species:Arabidopsis thaliana


Alignment Length:269 Identity:94/269 - (34%)
Similarity:129/269 - (47%) Gaps:33/269 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSI 180
            |:||||:....||..|||.|..:|::|...|:.|::||:.|||||:.|...:.....:......:
plant    35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDL 99

  Fly   181 KNKTLDVKKAIAKQDMDRQGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGG 245
            ..:.:.|..|     .:|..|.||||   .||.|  |..|...||:|..    .||..|||||.|
plant   100 HGRRIRVNYA-----TERGSGFGGRG---FGGPG--GGYGASDGGYGAP----AGGYGGGAGGYG 150

  Fly   246 GFGNSGGNFGGGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNG---GGGGGYGGGNSNGSWGGNG 307
            |..:..||.||  |||.||.:..||:.||     .|||..::|   |||||||     .::||.|
plant   151 GNSSYSGNAGG--GGGYGGNSSYGGNAGG-----YGGNPPYSGNAVGGGGGYG-----SNFGGGG 203

  Fly   308 GGGGGGGGFGNEYQQSYGGGPQRNSNFGNNRPAPYSQGGGGGGFNKGNQGGGQGFAGNNYNTGGG 372
            |.|..||..|:|   ::..|...|:.|.:...:....|.......:...||.:.|.|:: |..|.
plant   204 GYGVAGGVGGSE---NFAQGSSTNAGFDDKFESNQPLGNDTDHQTESGLGGDEQFGGSD-NQFGD 264

  Fly   373 GQGGNMGGG 381
            .:.||...|
plant   265 AENGNTENG 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992
RRM_SF 116..188 CDD:473069 23/71 (32%)
GR-RBP5NP_177563.1 RRM 33..111 CDD:440488 25/80 (31%)
Blue background indicates that the domain is not in the aligned region.

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