DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and AT1G33470

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_174613.2 Gene:AT1G33470 / 840240 AraportID:AT1G33470 Length:245 Species:Arabidopsis thaliana


Alignment Length:111 Identity:38/111 - (34%)
Similarity:56/111 - (50%) Gaps:19/111 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY-----SQSYMI 78
            |.....|:|:|||.:.|....|:.:||::|:||:.||:.|..:.||:|:||:|:     :|...:
plant     2 EDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66

  Fly    79 DNAQNARPHKIDGRTVEPKRA---VPRQEIDSPNAGATVKKLFVGG 121
            |.|.     .||||......|   |.|.:..||..|      .|||
plant    67 DPAP-----VIDGRRANCNLAAFGVQRSKPSSPIHG------HVGG 101

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 30/84 (36%)
RRM_SF 116..188 CDD:302621 3/6 (50%)
AT1G33470NP_174613.2 RRM_RBM24_RBM38_like 7..82 CDD:240830 28/79 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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