Protein Alignment Hrb87F and PABN1

DIOPT Version :10

• Sequence 1: NP_476806.2
• Gene: Hrb87F / 48535
• FlyBaseID: FBgn0004237
• Length: 385
• Species: Drosophila melanogaster
• Sequence 2: NP_001190511.1
• Gene: PABN1 / 835186
• AraportID: AT5G51120
• Length: 265
• Species: Arabidopsis thaliana
• Alignment Length: 114
• Identity: 23/114 - (20%)
• Similarity: 52/114 - (45%)
• Gaps: 19/114 - (16%)

  Fly    12 DDGEEITEPEQL--RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQ 74
            :.|....|.|::  |.:::|.:||..|.:.::.||:..|.:..|.::.| |..:.:||.::.:.:
plant   127 NSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVE 190

  Fly    75 SYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLR 123
            ...:.|:......::.||.::                .:.|:..|.|:|
plant   191 VEAVQNSLILNESELHGRQIK----------------VSAKRTNVPGMR 223

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hrb87F	NP_476806.2	RRM1_hnRNPA_like	25..102	CDD:409992	15/76 (20%)
		RRM_SF	116..188	CDD:473069	3/8 (38%)
PABN1	NP_001190511.1	SF-CC1	<56..>213	CDD:273721	19/102 (19%)
		RRM_II_PABPs	142..213	CDD:409747	15/87 (17%)