DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and AT5G40490

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_198865.1 Gene:AT5G40490 / 834047 AraportID:AT5G40490 Length:423 Species:Arabidopsis thaliana


Alignment Length:408 Identity:154/408 - (37%)
Similarity:212/408 - (51%) Gaps:47/408 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 DDGEEITEP------EQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFI 70
            :|.::.::|      :...|:|:|||...||......||.|:|.|.|.|:|||.||.:.|||||:
plant    24 EDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFV 88

  Fly    71 TYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYF 135
            ||:.|.::|...... |.|.|:.||.||.:||..:.|.:  ...||:||||:....|::..:|:|
plant    89 TYADSSVVDKVIQDN-HIIIGKQVEIKRTIPRGSMSSND--FKTKKIFVGGIPSSVDDDEFKEFF 150

  Fly   136 KDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTH-SIKNKTLDVKKAIAKQ----- 194
            ..||::....|:.|..||:.|||.|:.::..|.||.::.:... .:....:::|||..|:     
plant   151 MQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVT 215

  Fly   195 -------DMDRQGGGG---GRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGN 249
                   |.....|||   |.||...||.||.|...:.|||:|| .|..|.|.:||..||.|   
plant   216 TPSKRFGDSRSNFGGGYGDGYGGGHGGGYGGPGGPYKSGGGYGG-GRSGGYGGYGGEFGGYG--- 276

  Fly   250 SGGNFGGGQGGGSG----GWNQQGGSGGGPWNNQGGGNGGWNGGGGGGYGGGNSN---GSWGGNG 307
             ||.:|||.|...|    |::.:.|.|||.:|     .||::.|||||||||..:   ||:|..|
plant   277 -GGGYGGGVGPYRGEPALGYSGRYGGGGGGYN-----RGGYSMGGGGGYGGGPGDMYGGSYGEPG 335

  Fly   308 GGGGG-----GGGFGNEYQQSYGGGPQRNSNFGNNRPAPYSQGGGGGGFNKGNQGGGQGFAGNNY 367
            ||.||     |||:|:.....||||.......|......|..||.|||...|...||.|..|.::
plant   336 GGYGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRGGGGYDMGGVGGGGAGGYGAGGGGNGGGSF 400

  Fly   368 NTGGGGQGGNMGGGNRRY 385
            ..||||:||..|||:.||
plant   401 YGGGGGRGGYGGGGSGRY 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 35/76 (46%)
RRM_SF 116..188 CDD:473069 21/72 (29%)
AT5G40490NP_198865.1 RRM_SF 44..114 CDD:473069 32/70 (46%)
RRM_SF 131..209 CDD:473069 24/77 (31%)

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