DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hrb87F and AT5G10350

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_196597.1 Gene:AT5G10350 / 830899 AraportID:AT5G10350 Length:217 Species:Arabidopsis thaliana


Alignment Length:118 Identity:29/118 - (24%)
Similarity:56/118 - (47%) Gaps:13/118 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 NYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQ 74
            |.:..||:    ..|.:::|.:||..|.:.::.||:..|.:..|.::.| |..:.:||.::.:.:
plant    79 NQEGKEEV----DARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVE 138

  Fly    75 SYMIDNAQNARPHKIDGR--TVEPKRA-VPRQE-----IDSPNAGATVKKLFV 119
            ...:..|......::.||  .|.|||. ||..:     ..:|:.|...::.||
plant   139 VEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFV 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 20/79 (25%)
RRM_SF 116..188 CDD:473069 2/4 (50%)
AT5G10350NP_196597.1 PIN_SF <6..70 CDD:475124
RRM_II_PABPs 90..161 CDD:409747 15/71 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.