DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Hrb87F and CP29

DIOPT Version :9

Sequence 1:	NP_001163602.1	Gene:	Hrb87F / 48535	FlyBaseID:	FBgn0004237	Length:	385	Species:	Drosophila melanogaster
Sequence 2:	NP_001190079.1	Gene:	CP29 / 824514	AraportID:	AT3G53460	Length:	363	Species:	Arabidopsis thaliana

Alignment Length:	202	Identity:	60/202 - (29%)
Similarity:	84/202 - (41%)	Gaps:	26/202 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly   116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSI 180
            |||||.|..:.|...|.:.|:..|.:..|.::.||.||:.|||.|:.......|:....|....:
plant   100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYV 164

  Fly   181 KNKTLDVK------KAIAKQDMDRQGGGGGR-----GGPRAGGRGGQGDRGQGGGGWGGQNRQNG 234
            ......:.      :.:...:.:      ||     .||....|.....||...||:|.:.
plant   165 SRYLCSLLCLYLLIRVLCGLEFE------GRPLRVNAGPPPPKREESFSRGPRSGGYGSER---- 219

  Fly   235 GGNWGGAGGGGGFGNSGGNFGGGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGGGGG--YGGG 297
            ||.:|...|||.....||.:|..:|||.|.....||.||...::.|.|:|..:|.|.|.  |.|
plant   220 GGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVG- 283

  Fly   298 NSNGSWG 304
              |.|||
plant   284 --NLSWG 288

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Hrb87F	NP_001163602.1	RRM1_hnRNPA_like	25..102	CDD:241022
Hrb87F	NP_001163602.1	RRM_SF	116..188	CDD:302621	21/71 (30%)
CP29	NP_001190079.1	RRM_SF	100..194	CDD:302621	23/99 (23%)
CP29	NP_001190079.1	RRM_HP0827_like	279..355	CDD:240845	6/13 (46%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1202220at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920